RetrogeneDB ID: | retro_cpor_10 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:3369251..3369938(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000019924 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA10 | ||
Ensembl ID: | ENSCPOG00000011495 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QLSYIAEDENGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSL |
QLSYIAEDE.GK.VGYVLAKMEEDP.DV.HGHITSLAVKRSHRRLGLAQKLMDQASRAM.ENF.A.YVSL | |
Retrocopy | QLSYIAEDEDGKVVGYVLAKMEEDPNDVAHGHITSLAVKRSHRRLGLAQKLMDQASRAMVENFGARYVSL |
Parental | HVRKSNRAALHLYSNTLNFQISEVEPKYYADGEDAYAMKRDLTQMAEELRRHLELKDKSRHVVLGVIENK |
HVRKSNRAALHLYS.TLNFQ..EVEP.YYADGEDAYAM.RDL.QMA.ELRR.LELK.K..HVVLG..EN. | |
Retrocopy | HVRKSNRAALHLYSHTLNFQVNEVEPRYYADGEDAYAMRRDLSQMAGELRRQLELK-KGGHVVLGSGENQ |
Parental | AESKGTPLPGPGEACREEKILAAEDSGGDSKDLSEVSETTESTDVKDSSEASDSAS |
....G...P.....C..E...AA.DSG.D.K...E.SE.TESTDV.DSSE..DS.S | |
Retrocopy | ETHSGI-FPDSEKTCQQES-PAATDSGSDTK---ESSESTESTDVQDSSEDLDSIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 21 .91 RPM |
SRP017611_kidney | 0 .31 RPM | 24 .92 RPM |
SRP017611_liver | 0 .17 RPM | 12 .97 RPM |
SRP040447_lung | 0 .00 RPM | 25 .80 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 22 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018457 | 1 retrocopy | |
Bos taurus | ENSBTAG00000047702 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019415 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014506 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011495 | 1 retrocopy |
retro_cpor_10 ,
|
Dipodomys ordii | ENSDORG00000002753 | 1 retrocopy | |
Equus caballus | ENSECAG00000015203 | 1 retrocopy | |
Felis catus | ENSFCAG00000028705 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006054 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014267 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008989 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000463 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005952 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012791 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007455 | 1 retrocopy |