RetrogeneDB ID: | retro_btau_177 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:95805272..95805962(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000013149 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA10 | ||
Ensembl ID: | ENSBTAG00000047702 | ||
Aliases: | None | ||
Description: | N-alpha-acetyltransferase 10 [Source:UniProtKB/TrEMBL;Acc:G3N191] |
Percent Identity: | 51.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKISSDAQPVDSG |
MNIRNARP.DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDE.GKIVGYVLAK...D...V..G | |
Retrocopy | MNIRNARPDDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHG |
Parental | RWVSLSLILNHGSGGLVHQLLSQAKTPPGKDMEETSMHMTERQSEMATLYVEVRIQELEVSWSSSPQLTG |
...SL.....H...GL...L..QA.................R.S..A.L...........S......... | |
Retrocopy | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFSAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPRYYAD |
Parental | SMGAGAIQRAPQQLREGLRRHLELKEKGRHVVLGSIENKMEGKGNSLPSSGEACREEKGLVAEDSGGDSK |
...A.A..R...Q....LRR.L.LK.KG..VVLGS.EN..E..G..LP.S..AC..EK......SG.DSK | |
Retrocopy | GEDAYAMKRDLSQMADELRRQLQLK-KGGYVVLGSRENQ-ETQGSTLPGSKMAC-QEKNPATDGSGSDSK |
Parental | DLSEVSETTESTDVKDSSEASDSAS |
...E.SE.TES.D..DSSE.S.S.S | |
Retrocopy | ---EPSESTESPDAQDSSEDSNSTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .51 RPM |
ERP005899_muscle | 0 .00 RPM | 21 .17 RPM |
SRP017611_brain | 0 .00 RPM | 7 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .54 RPM |
SRP017611_liver | 0 .00 RPM | 7 .55 RPM |
SRP030211_testis | 3 .86 RPM | 3 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_132 |
Macaca mulatta | retro_mmul_21 |