RetrogeneDB ID: | retro_ecab_717 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:57221283..57221970(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAA10 | ||
Ensembl ID: | ENSECAG00000015203 | ||
Aliases: | None | ||
Description: | N(alpha)-acetyltransferase 10, NatA catalytic subunit [Source:HGNC Symbol;Acc:18704] |
Percent Identity: | 82.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNIRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHG |
MNIRNARP.DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDE.GKIVGYVLAKMEEDPDDVPHG | |
Retrocopy | MNIRNARPDDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHG |
Parental | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFNAKYVSLHVRKSNRAALHLYSNTLNFQISEVEPKYYAD |
HITSLAVKRSHRRLGLAQKLMDQASRAMIENF.A.YVSLHVRKSNRAALHLYSNTLNFQ.SEVEPKYYAD | |
Retrocopy | HITSLAVKRSHRRLGLAQKLMDQASRAMIENFSAQYVSLHVRKSNRAALHLYSNTLNFQVSEVEPKYYAD |
Parental | GEDAYAMKRDLTQMADELRRHLELKEKGRHMVLGSIENKVESKGNSLPSSGEACREEKGLAAEDSGGDSK |
GEDAYAMKRDL.QMADELRR.LE....G...V.GS.EN..E..G...P.S..AC.E.K..AA.DSG.DSK | |
Retrocopy | GEDAYAMKRDLAQMADELRRQLEQRKGG--YVVGSRENQ-ETQGSTHPGSEGACQEQKISAADDSGSDSK |
Parental | DLSEVSETTESTDVKDSSEASDSAS |
...E.SE..ESTDV.DSSE.SDSAS | |
Retrocopy | ---EPSESPESTDVQDSSEDSDSAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .18 RPM | 17 .95 RPM |
SRP021940_cerebellum | 0 .00 RPM | 34 .54 RPM |
SRP021940_embryo | 0 .05 RPM | 40 .38 RPM |
SRP021940_placental_villous | 0 .14 RPM | 23 .29 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 36 .46 RPM |
SRP021940_testis | 7 .16 RPM | 16 .82 RPM |