RetrogeneDB ID: | retro_cpor_1094 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_452:67704..68920(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPH1 | ||
Ensembl ID: | ENSCPOG00000001485 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.62 % |
Parental protein coverage: | 91.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA |
MMLGTE.GE.FVVK..GLPWSCSADEVQRFFS.CKIQNGAQGI.FIYTREGRPSGEAFVELESEDEVKLA | |
Retrocopy | MMLGTEVGEEFVVKMQGLPWSCSADEVQRFFSACKIQNGAQGICFIYTREGRPSGEAFVELESEDEVKLA |
Parental | LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG |
LKKDRE.MGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFV.LRGLPFGCSKE.IVQFFSGLEI.PNG | |
Retrocopy | LKKDRESMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVQLRGLPFGCSKEDIVQFFSGLEIMPNG |
Parental | ITLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-SSRAEVRTHYDPPRKLMAMQRPG |
ITLPVDFQ.G...G.....F.SQEIAEKALKKHKERI.HRYIEIFK.SSRAEVRTHYDPPRKLMAMQ.PG | |
Retrocopy | ITLPVDFQ>GGVWGRPSCSF-SQEIAEKALKKHKERIEHRYIEIFK>SSRAEVRTHYDPPRKLMAMQQPG |
Parental | PYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRD-LNYCFSGMSDHRYG |
PYDRPGAGRGYNSIGRGAGFERMR.GAYG...GGYDDYNGYNDGYGFGSDRFGR..LNYCFSGMSDHRYG | |
Retrocopy | PYDRPGAGRGYNSIGRGAGFERMRHGAYG---GGYDDYNGYNDGYGFGSDRFGRP<LNYCFSGMSDHRYG |
Parental | DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK |
DGG.TFQSTTGHCVHMRGL.Y.ATENDIYNFFS.LNPVRVHIEIGPDGRVTGEADVEFATHEDAV.AMSK | |
Retrocopy | DGGFTFQSTTGHCVHMRGLLY*ATENDIYNFFSLLNPVRVHIEIGPDGRVTGEADVEFATHEDAVEAMSK |
Parental | DKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPAS |
DKANMQHRYVELFLNSTAGASGGAY..........S.....GG....Q..GG.G......YGG..S | |
Retrocopy | DKANMQHRYVELFLNSTAGASGGAYCSQMMGGMGLSNQSSYGGPASQQLSGGYG----RGYGGQSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 141 .49 RPM |
SRP017611_kidney | 0 .94 RPM | 229 .06 RPM |
SRP017611_liver | 0 .17 RPM | 90 .23 RPM |
SRP040447_lung | 0 .05 RPM | 338 .31 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 85 .65 RPM |