RetrogeneDB ID: | retro_cpor_121 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_62:1088132..1089380(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000003678 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPH1 | ||
Ensembl ID: | ENSCPOG00000001485 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 91.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL |
MLG.EGGEG.VVK.RGLPWSCS...VQ.F.SDC.I..G..G..FIYTREGR.SGEAFVELESED.VK.AL | |
Retrocopy | MLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL |
Parental | KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGI |
KKDRE.MGHRY.EVFKS...EMDWVLKH.GPNS.DTANDGFVRLRGLPFGC.KEEIVQFFSGLEIVPNGI | |
Retrocopy | KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGI |
Parental | TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYD |
TLPVD..G..TGEAFVQFASQE.AEKAL.KHKERIGHRYIE.FKSS..EVR...DPP.K.M..QRPGPYD | |
Retrocopy | TLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYD |
Parental | RPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGS |
RPG..R.Y..I...AG.ERMR.GAY..GYGGY..Y.G..DGYGF..D.FGRDL.YC.SGM.DHRYGDG.. | |
Retrocopy | RPGTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEF |
Parental | TFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKAN |
T.QSTTGHCVHMRGLPY.ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE.AVAAMSKD.AN | |
Retrocopy | TVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRAN |
Parental | MQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGG---MGLSNQSSYGG |
MQHRY.ELFLNST.GAS.GAY..........S.A.A......SQ...G....G.S.Q.S.GG | |
Retrocopy | MQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 67 .29 RPM | 141 .49 RPM |
SRP017611_kidney | 193 .25 RPM | 229 .06 RPM |
SRP017611_liver | 126 .10 RPM | 90 .23 RPM |
SRP040447_lung | 278 .54 RPM | 338 .31 RPM |
SRP040447_skeletal_muscle | 122 .44 RPM | 85 .65 RPM |