RetrogeneDB ID: | retro_cpor_1188 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_54:10126215..10127178(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UAP1 | ||
Ensembl ID: | ENSCPOG00000004568 | ||
Aliases: | None | ||
Description: | UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457] |
Percent Identity: | 58.08 % |
Parental protein coverage: | 62.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 9 |
Parental | LFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSHKT-LFQIQ-AERILKLQLLAE-KYYGNKCIIP |
LFQISQNK.AV.LLA.GQ......A.P....DVG..SHKT..F..Q.AE..LKLQLLA...Y.G...I.P | |
Retrocopy | LFQISQNKGAVPLLADGQRATVEMANP*RKCDVGSLSHKT<IFRFQ<AEHVLKLQLLAK<SYHGFRWISP |
Parental | WYIMTSGRTMEATKEFFTKHKY-FGLKK-ENIIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRA |
W.I..SGR..E.TKEFF.KHK...G.KK.E..I.F..GMLPAMSF.GKI.LEEK.K.S.APDGN.....A | |
Retrocopy | W*IGASGRKIEETKEFFIKHKH<LG*KK<EYVIYFYEGMLPAMSFNGKITLEEKHKISRAPDGNVXXXQA |
Parental | LAAQNIVEDMEQRGIWCIHVYCVDNILVKVADPRFIGFCIQKG-ADCGAKVVEK-TNPTEPVGVVCRVDG |
.AAQN.VED.EQ.G.WC.....VD..LVKV..P..I.F...KG.ADCGAKV.E...N.TEP.GVV..V.G | |
Retrocopy | FAAQNVVEDVEQKGTWCTCICYVDDVLVKV-KPMVIEFHVEKG<ADCGAKVIEE<ENTTEPGGVVRAVNG |
Parental | VYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHF-FTIPFLRDVVNVYEPQLQHHVAQKKIPYVDSRGE |
...VVEYS.ISLAT.Q.RSSDG..LF..G.I.NH.....P.LRD.V.V.EPQLQ.H.A..KIP.V...GE | |
Retrocopy | E*WVVEYSKISLATSQVRSSDGQVLFCVGCITNHI<LIVPCLRDAVGVDEPQLQRHLAHRKIPSVKYWGE |
Parental | LIKPDKPNGI-KMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPT |
LI.PDK..G.....K...DIFQ.A.K..VYE.L.ED.FS.LK.ADS..GKDNP. | |
Retrocopy | LIMPDKSCGM<ELPKVASDIFQVAEKLAVYEGLSEDGFSLLKDADSHSGKDNPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 59 .25 RPM |
SRP017611_liver | 0 .00 RPM | 29 .25 RPM |
SRP040447_lung | 0 .00 RPM | 36 .92 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 25 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004264 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004568 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024661 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019514 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002926 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002725 | 3 retrocopies |