RetrogeneDB ID: | retro_cpor_1189 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_54:10202212..10203175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UAP1 | ||
Ensembl ID: | ENSCPOG00000004568 | ||
Aliases: | None | ||
Description: | UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457] |
Percent Identity: | 59.82 % |
Parental protein coverage: | 62.26 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | LFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSHKTLFQIQAERILKLQLLAE-KYYGNKCIIPWY |
LFQI..NK.AV.LL..GQ....G.AYP....DVG..SHKT.F...AE..LKLQLLA...Y.G.K.I.P.. | |
Retrocopy | LFQIF*NKGAVPLLEDGQRATVGMAYPRRKCDVGSLSHKT-FSDLAEYVLKLQLLAK<SYHGLKWISPC* |
Parental | IMTSGRTMEATKEFFTKHKYFG-LKKENIIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNG-GLYRALA |
I..SGR..E..KEFF.KHK.FG.LKKEN.I.F.QGMLP.MSF.GKI.LEEK.K.SMAPDGN..G.....A | |
Retrocopy | IGASGRKTEVSKEFFIKHKHFG<LKKENVIYFDQGMLPVMSFNGKIPLEEKHKISMAPDGNE<GFFQGFA |
Parental | AQNIVEDMEQRGIWCIHVYCVDNILVKVADPRFIGFCIQKG-ADCGAKVVEKT-NPTEPVGVVCRVDGVY |
AQ..VED.EQ.G.WC.....VD..LVKV..P..I.F...KG.ADCGAK..E...N.TEP.GVVC.V.G.. | |
Retrocopy | AQDMVEDVEQKGTWCTCICYVDDALVKVK-PMVIEFHVEKG<ADCGAKMIEEI<NTTEPGGVVCAVIGG* |
Parental | QVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTIPFLRDVVNVYEPQLQHHVAQKKIPYVDSRGELIK |
.VVE.S.ISLAT.Q.RSSDG..LF..G.I.NH.F..P.LRD.V.V.EPQL..H.A..KIPYVDS.GELI. | |
Retrocopy | WVVE*SKISLATSQVRSSDGQVLFCVGCITNHIFIVPCLRDAVDVDEPQL*RHLAHRKIPYVDSWGELIM |
Parental | PDKPNGI-KMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPT |
PDK..GI.K..K...DIFQ.A.K..VYE.L.ED.FS.LK.ADS..GKDNP. | |
Retrocopy | PDKSCGI<KLPKVASDIFQIAEKLAVYEGLSEDGFSQLKDADSHSGKDNPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 59 .25 RPM |
SRP017611_liver | 0 .00 RPM | 29 .25 RPM |
SRP040447_lung | 0 .00 RPM | 36 .92 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 25 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004264 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004568 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024661 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019514 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002926 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002725 | 3 retrocopies |