RetrogeneDB ID: | retro_tsyr_121 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_3255:191389..192078(+) | ||
Located in intron of: | ENSTSYG00000007470 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UAP1 | ||
Ensembl ID: | ENSTSYG00000002725 | ||
Aliases: | None | ||
Description: | UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457] |
Percent Identity: | 82.25 % |
Parental protein coverage: | 79.24 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | NGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKRADPR-IGFCIQKGADCGAKVVEKTNPTEPVGVV |
NGGLY..LA.QNIVEDM.QRGIWSIHVYCVD.I.VK.A.P..IGFCIQKGAD.GAKVVEKTNP.EPV.V. | |
Retrocopy | NGGLY*VLATQNIVEDMKQRGIWSIHVYCVDKIIVKMAEPWFIGFCIQKGADYGAKVVEKTNPIEPVRVA |
Parental | CRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNIYEPQLQHHVA-QKKIPYV |
CRVDGVYQVVE.SEISL..AQK.SS.GRLLFN.GN..N.F.TV.FLRDVVNIYE.QLQH.VA..KKIPY. | |
Retrocopy | CRVDGVYQVVE*SEISLTAAQK*SSAGRLLFNVGNVGNCFPTVQFLRDVVNIYERQLQHYVA<LKKIPYM |
Parental | DSQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHC |
DSQ..LIKPDKPNGIKMEKFVFDIFQF.KKFVVYEVL.EDEFSPLK.ADSQNGKDNPTTARHALMS.HHC | |
Retrocopy | DSQQRLIKPDKPNGIKMEKFVFDIFQFTKKFVVYEVLWEDEFSPLKYADSQNGKDNPTTARHALMSIHHC |
Parental | WVLNAGGHFIDENGSRLPAIP |
W.LNAGG.FIDE..S.LPAIP | |
Retrocopy | WILNAGGYFIDEHDSCLPAIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004264 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004568 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024661 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019514 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002926 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002725 | 3 retrocopies |
retro_tsyr_121 , retro_tsyr_390, retro_tsyr_582,
|