RetrogeneDB ID: | retro_cpor_129 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:23943376..23943730(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NOP16 | ||
Ensembl ID: | ENSCPOG00000026072 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.46 % |
Parental protein coverage: | 65.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NARRKAAPRIQCS-HIRHAWDHTKSVRQNLAEMGL-AMDPN-KAVPVRKRKVKAMEVDVEERPKELVRKP |
NA..KAAP.I.CS..I.HAWDH..S..QNLAE..L....P.....P..K..VK.MEVD.E.RPKE...K. | |
Retrocopy | NAPWKAAPWIKCSPDIQHAWDHARSMQQNLAEIKL<SLRPQQRGSPPSKKDVKVMEVDMEYRPKEFL*KH |
Parental | YVLNDLEAEASLPEKKGNTLSRDLIEYV-HHMVEN-YGEDYKAMARDEKNYY |
Y.LNDLEAEA.L.EK........L..Y...HMV.N..GEDYK.M...E.N.Y | |
Retrocopy | YILNDLEAEAKLLEKETPCPRTLLAAYT<YHMVAN<HGEDYKGMGWHENNDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .70 RPM |
SRP017611_liver | 0 .00 RPM | 16 .02 RPM |
SRP040447_lung | 0 .00 RPM | 13 .34 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 21 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012315 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000026072 | 1 retrocopy |
retro_cpor_129 ,
|
Echinops telfairi | ENSETEG00000010391 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003504 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012552 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025869 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017284 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029577 | 1 retrocopy |