RetrogeneDB ID: retro_mluc_2425

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430370:118281..118749(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023129
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NOP16
• Ensembl ID: ENSMLUG00000003504
• Aliases: None
• Description: None

Sequence

>retro_mluc_2425
CTGAACCGAAATGCTTACGAAAAGGCAGCCCTGCAGATCAAGTGCTACCACATCCAACATGCCTGGGACCATACCAAATC
CATGTGGCAGAACCTGGTGGAGATGGGGTTGGCTATGGACCCCAACAAAGCAGTGCCCTTCCGTAAGAGAAAGATGAAGG
CCAGGGAGGTGACCATAGAGGAGAGGCTTCAGGAGCTTGTGCAGAAGCCCTATGTGCTAAATGACCTGGAGGCAGAAGCC
AGTCTCCCAGAAAAGAAAGGAAATACACTGTCTCGGGACCTCATAGCCTGGGTACGCTACATGGTGAAGAACCACGAGGA
GGAATATAAGGTCATGGCCCAGGATTAGAAGAATTACTATCAAGATACCCCGAAACAAATTCAGAGTAAGATCAATGTCT
ATAGGTGTTTTTACCCAGCAGAGTGGCAAGCCTTCGTTCATTCTTTGCCGAAGAATAAGATGGAGGTT

Alignment

ORF - retro_mluc_2425 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.28 %
• Parental protein coverage: 87.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LNRSARRKAAPRIECSHIRHAWDHTKSVRQNLAEMGLAMDPNKAVPLRKRKVQAMEVDVDERRQ-LVRKP
          LNR.A..KAA..I.C.HI.HAWDHTKS..QNL.EMGLAMDPNKAVP.RKRK..A.EV...ER.Q.LV.KP
Retrocopy LNRNAYEKAALQIKCYHIQHAWDHTKSMWQNLVEMGLAMDPNKAVPFRKRKMKAREVTIEERLQELVQKP

Parental  YVLNDLEAEASLPEKKGNTLSRDLIDYVRYMVENHGEDYKAMARDEKNYYQDTPKQIRNKINVYKRFYPA
          YVLNDLEAEASLPEKKGNTLSRDLI..VRYMV.NH.E.YK.MA.D.KNYYQDTPKQI..KINVY..FYPA
Retrocopy YVLNDLEAEASLPEKKGNTLSRDLIAWVRYMVKNHEEEYKVMAQD*KNYYQDTPKQIQSKINVYRCFYPA

Parental  EWEAFAHSLQKNAMEV
          EW.AF.HSL.KN.MEV
Retrocopy EWQAFVHSLPKNKMEV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2425 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012315	1 retrocopy	retro_cjac_2208,
Cavia porcellus	ENSCPOG00000026072	1 retrocopy	retro_cpor_129,
Echinops telfairi	ENSETEG00000010391	1 retrocopy	retro_etel_1329,
Myotis lucifugus	ENSMLUG00000003504	1 retrocopy	retro_mluc_2425 ,
Mustela putorius furo	ENSMPUG00000012552	1 retrocopy	retro_mputfur_381,
Mus musculus	ENSMUSG00000025869	2 retrocopies	retro_mmus_3033, retro_mmus_3258,
Rattus norvegicus	ENSRNOG00000017284	1 retrocopy	retro_rnor_2739,
Sus scrofa	ENSSSCG00000029577	1 retrocopy	retro_sscr_510,