Parental gene:

NOP16, ENSSSCG00000029577

Aliases:None
Description:NOP16 nucleolar protein [Source:HGNC Symbol;Acc:26934]
Organism:Pig (Sus scrofa)
Coordinates:2:83139728..83146414(+)


>ENSSSCG00000029577
ATGCCCAAGGCCAAGGGGAAGACCCGGAGGCAGAAGTTCGGTTACAATGTTAACCGGAAGCGTCTGAACCGAAATGCTCG
ACGGAAGGCAGCGCCGCGGATCCAGTGCTCCCACATCCGACATGCCTGGGACCAGACCAAATCGGTGCGGCAGAACCTGG
CCGAGATGGGTTTGGCTATGGACCCCAACAGGGCGGTGCCCCTTATTAAGAGAAAGGTAAAAGCCATGGAGGTGGACAGA
GAGGAGAGGCCTAAGGAGCTTGTGAGGAAGCCTTATGTGCTCAATGACCTAGAGGCAGAAGCCAGCCTTCCAGAAAAGAA
AGGAAATACGCTGTCTCGGGACCTCATTGACTATGTTCGCTATATGGTGGAGAACCATGGAGAGGACTANTAA

Library Parental gene expression (RPM)
SRP014902_placenta 11 .15 RPM
SRP014902_testis 14 .85 RPM
SRP018856_adipose 34 .18 RPM
SRP018288_kidney 32 .11 RPM
SRP018288_lung 18 .23 RPM
SRP018288_liver 20 .79 RPM
SRP018288_heart 12 .28 RPM
SRP035408_liver 40 .78 RPM
SRP035408_brain 40 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016694 ortholog_one2one 2 retrogenes
retro_cfam_1790, retro_cfam_1793,
Callithrix jacchus ENSCJAG00000012315 ortholog_one2many 1 retrogene
retro_cjac_2208,
Cavia porcellus ENSCPOG00000026072 ortholog_one2one 1 retrogene
retro_cpor_129,
Echinops telfairi ENSETEG00000010391 ortholog_one2many 1 retrogene
retro_etel_1329,
Myotis lucifugus ENSMLUG00000003504 ortholog_one2one 1 retrogene
retro_mluc_2425,
Mustela putorius furo ENSMPUG00000012552 ortholog_one2many 1 retrogene
retro_mputfur_381,
Mus musculus ENSMUSG00000025869 ortholog_one2one 2 retrogenes
retro_mmus_3033, retro_mmus_3258,
Otolemur garnettii ENSOGAG00000000824 ortholog_one2one 2 retrogenes
retro_ogar_1323, retro_ogar_2299,
Rattus norvegicus ENSRNOG00000017284 ortholog_one2many 1 retrogene
retro_rnor_2739,
Ictidomys tridecemlineatus ENSSTOG00000004869 ortholog_one2one 1 retrogene
retro_itri_1124,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_510 88.54 73.85
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Download FASTA sequences of all ENSSSCG00000029577 retrocopies