RetrogeneDB ID: | retro_dnov_1301 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_177825:4332..4624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000000506 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.57 % |
Parental protein coverage: | 54.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETE |
.R.AATASDST.RVSVR.KLLVKEVA..EAN.PC.C.VH.P..NKLHCFQL..TPDE.YYQGGKFQFETE | |
Retrocopy | ARMAATASDSTHRVSVRGKLLVKEVAKFEANAPCPCNVHWPESNKLHCFQLLGTPDEDYYQGGKFQFETE |
Parental | VPD-AYNMVPPKVKCLTRIWHPNITETG |
V.D.A.NMVPPKVKCLTR.WHPNIT..G | |
Retrocopy | VLD>AHNMVPPKVKCLTRSWHPNITDMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 4 .28 RPM |
SRP012922_cerebellum | 0 .00 RPM | 3 .44 RPM |
SRP012922_heart | 0 .00 RPM | 2 .78 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
SRP012922_liver | 0 .00 RPM | 5 .11 RPM |
SRP012922_lung | 0 .31 RPM | 4 .12 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 2 .42 RPM |
SRP012922_spleen | 0 .00 RPM | 8 .24 RPM |