RetrogeneDB ID: | retro_mmul_628 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:36613165..36613593(-) | ||
Located in intron of: | ENSMMUG00000017467 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.13402 | ||
Ensembl ID: | ENSMMUG00000018482 | ||
Aliases: | None | ||
Description: | NEDD8-conjugating enzyme UBE2F [Source:RefSeq peptide;Acc:NP_001247903] |
Percent Identity: | 90.41 % |
Parental protein coverage: | 78.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT |
VAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFE..VPDAYNM.PPK.KCLTKIWH.NIT | |
Retrocopy | VAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFE--VPDAYNMMPPKMKCLTKIWHLNIT |
Parental | ETGEICLSLLREHSIDGTG-WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY |
E.GEICLSLLREHSIDGT..WAP.RTLKDVVWGLNSLFTDLLNFDDPLNIE.AEHHL.DKEDF.NKVD.Y | |
Retrocopy | EVGEICLSLLREHSIDGTA<WAPKRTLKDVVWGLNSLFTDLLNFDDPLNIEVAEHHLQDKEDFQNKVDNY |
Parental | IKRYAR |
IK.YAR | |
Retrocopy | IKHYAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 19 .05 RPM |
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 23 .32 RPM |
SRP007412_cerebellum | 0 .26 RPM | 17 .76 RPM |
SRP007412_heart | 0 .12 RPM | 11 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .26 RPM |
SRP007412_liver | 0 .00 RPM | 17 .69 RPM |
SRP007412_testis | 0 .04 RPM | 13 .27 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2439 |
Pan troglodytes | retro_ptro_1410 |
Gorilla gorilla | retro_ggor_1519 |
Pongo abelii | retro_pabe_1785 |