RetrogeneDB ID: | retro_sscr_291 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 12:15759092..15759536(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000027723 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.65 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT |
MLTLASKLK.DD...GS..S...S.STR.VSVRDRLL.K.VAE.EANL.C..KVHFPDPNK..CFQLTVT | |
Retrocopy | MLTLASKLKWDDCFEGSQKSATVSSSTRQVSVRDRLLIKKVAEHEANLLCMHKVHFPDPNKRLCFQLTVT |
Parental | PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV |
P.EGYYQGGKF..ETEVP.A.NMVPPK.K.LTRIWHP.I.ETGEI.LS.L..H.IDGT..APTR..KDV. | |
Retrocopy | PEEGYYQGGKFWCETEVPHAHNMVPPKTKFLTRIWHPIIAETGEIYLSWLSRHLIDGTD*APTRIMKDVA |
Parental | WGLNSLFT |
WGL.SLFT | |
Retrocopy | WGLKSLFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 33 .18 RPM |
SRP014902_testis | 0 .00 RPM | 22 .63 RPM |
SRP018288_heart | 0 .00 RPM | 14 .04 RPM |
SRP018288_kidney | 0 .00 RPM | 34 .58 RPM |
SRP018288_liver | 0 .00 RPM | 31 .98 RPM |
SRP018288_lung | 0 .00 RPM | 25 .86 RPM |
SRP018856_adipose | 0 .00 RPM | 18 .57 RPM |
SRP035408_brain | 0 .00 RPM | 23 .88 RPM |
SRP035408_liver | 0 .00 RPM | 42 .30 RPM |