RetrogeneDB ID:

retro_ogar_2715

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873653.1:1638523..1638997(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000005308
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2715
ATGCTAACGCTGGCAAGAAAACTGAAGCACGATGATAGTCTCAAAGAGTCCTAGACATCAGACACAGCACCCAATTCCAC
TCGGAGGGTTACTGTGAGAGACAAGTTGCTTAGTAAAGAGGTTGCAGAACTTGAAGCTAATTGACCTTGTACATGTAAAG
TGCATTTTCCTGATCCAAACAAGCTTTGTTGCTTTCAACTAACTGTAACCCCAGATAAGGGTTACTACCAGGGTGGAAAG
TTGCAGTTTGAAACTGAAGTCCCCAATGCGTACAACATGGTGCCTCCCAAGGTGAAATGCTTGACCAGGATCTGGCACCC
CAACATCACAGAGACAGGTGAAAGTTGCCTAAGTTTACTGAGAGAACACTCCATCGACAACACTAGCTGGACTCCCACAC
AAATACTGCAGGATGTTGTTTGGGGATTAAACTCTTTGTTTACTGATCTTTTGAATTTTGATGACCCACTGAAT

ORF - retro_ogar_2715 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.44 %
Parental protein coverage: 85.41 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLTLASKLKRDDGLKGSRTSATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT
MLTLA.KLK.DD.LK.S.TS.TA..STRRV.VRDKLL.KEVAELEAN.PCTCKVHFPDPNKL.CFQLTVT
RetrocopyMLTLARKLKHDDSLKES*TSDTAPNSTRRVTVRDKLLSKEVAELEAN*PCTCKVHFPDPNKLCCFQLTVT
ParentalPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV
PD.GYYQGGK.QFETEVP.AYNMVPPKVKCLT.IWHPNITETGE.CLSLLREHSID.T.W.PT..L.DVV
RetrocopyPDKGYYQGGKLQFETEVPNAYNMVPPKVKCLTRIWHPNITETGESCLSLLREHSIDNTSWTPTQILQDVV
ParentalWGLNSLFTDLLNFDDPLN
WGLNSLFTDLLNFDDPLN
RetrocopyWGLNSLFTDLLNFDDPLN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2715 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000085511 retrocopy
Bos taurus ENSBTAG000000261142 retrocopies
Canis familiaris ENSCAFG000000123631 retrocopy
Callithrix jacchus ENSCJAG000000004763 retrocopies
Cavia porcellus ENSCPOG000000063681 retrocopy
Dasypus novemcinctus ENSDNOG000000005062 retrocopies
Equus caballus ENSECAG000000116871 retrocopy
Echinops telfairi ENSETEG000000092301 retrocopy
Homo sapiens ENSG000001841822 retrocopies
Gorilla gorilla ENSGGOG000000107093 retrocopies
Microcebus murinus ENSMICG000000120755 retrocopies
Myotis lucifugus ENSMLUG000000012865 retrocopies
Macaca mulatta ENSMMUG000000184824 retrocopies
Mustela putorius furoENSMPUG000000001011 retrocopy
Mus musculus ENSMUSG000000343433 retrocopies
Nomascus leucogenys ENSNLEG000000111522 retrocopies
Otolemur garnettii ENSOGAG00000005308 7 retrocopies
Pongo abelii ENSPPYG000000133153 retrocopies
Pan troglodytes ENSPTRG000000130812 retrocopies
Rattus norvegicus ENSRNOG000000199531 retrocopy
Sus scrofa ENSSSCG000000277233 retrocopies
Tarsius syrichta ENSTSYG000000115103 retrocopies
Tursiops truncatus ENSTTRG000000115282 retrocopies
Vicugna pacos ENSVPAG000000104851 retrocopy



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