RetrogeneDB ID: | retro_sscr_542 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 16:27693735..27694292(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000027723 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKE-VAELEANLPCTCKVHFPDPNKLHCFQLTV |
MLTL.SKLKR..GLKGS.AS.AASDSTRR.SV.DRLLVKE.VAELEANLPCT.KVHFPD.NKLHCFQLTV | |
Retrocopy | MLTLTSKLKRVGGLKGSLASAAASDSTRRISVGDRLLVKE<VAELEANLPCTYKVHFPDLNKLHCFQLTV |
Parental | TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDV |
.PDEGYYQGGKFQFETEVPD.YNMV.PKVKCLTRIWHP.ITETGEICLSLLRE.SIDGTGWAPTRTLKDV | |
Retrocopy | APDEGYYQGGKFQFETEVPDGYNMVSPKVKCLTRIWHPSITETGEICLSLLREQSIDGTGWAPTRTLKDV |
Parental | VWGLN-SLFTDLLNFDDPLNIEAAEHHLRDKEDFRSKVEDYIKRFAR |
VW.....L..DLLNFDDPLNI.AAEHHLR.KEDF..KVED.IKR.AR | |
Retrocopy | VWDSTLCLL*DLLNFDDPLNIAAAEHHLRVKEDFQNKVEDCIKRYAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 33 .18 RPM |
SRP014902_testis | 0 .14 RPM | 22 .63 RPM |
SRP018288_heart | 0 .08 RPM | 14 .04 RPM |
SRP018288_kidney | 0 .20 RPM | 34 .58 RPM |
SRP018288_liver | 0 .00 RPM | 31 .98 RPM |
SRP018288_lung | 0 .51 RPM | 25 .86 RPM |
SRP018856_adipose | 0 .35 RPM | 18 .57 RPM |
SRP035408_brain | 0 .00 RPM | 23 .88 RPM |
SRP035408_liver | 0 .06 RPM | 42 .30 RPM |