RetrogeneDB ID: | retro_dnov_2238 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_57899:5723..6051(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAX1BP3 | ||
Ensembl ID: | ENSDNOG00000023829 | ||
Aliases: | None | ||
Description: | Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:HGNC Symbol;Acc:30684] |
Percent Identity: | 77.68 % |
Parental protein coverage: | 99.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QRVEIHKLRQGENLILGFSIG-GGIDQDPSQNPFSEDKTDKGIYVTR-VSEGGPAEIAGLQIGDKIMQVN |
QRVEIH.LR.GENLILGF....G.IDQDPSQNPF.EDK.DKGIY.T..VSEGGPAEIAGLQ.GDKIMQVN | |
Retrocopy | QRVEIHMLRPGENLILGFCLE<GDIDQDPSQNPFPEDKMDKGIYFTQ<VSEGGPAEIAGLQSGDKIMQVN |
Parental | GWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSML |
G.D.T...H.QA.K.LTK.SEEVVRLLVTRQSLQ.A.QQSM. | |
Retrocopy | G*DVTVFPHHQAWKQLTKCSEEVVRLLVTRQSLQRAGQQSMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 41 .81 RPM |
SRP012922_cerebellum | 0 .00 RPM | 4 .67 RPM |
SRP012922_heart | 0 .00 RPM | 24 .13 RPM |
SRP012922_kidney | 0 .00 RPM | 13 .96 RPM |
SRP012922_liver | 0 .00 RPM | 9 .75 RPM |
SRP012922_lung | 0 .15 RPM | 58 .49 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 6 .40 RPM |
SRP012922_spleen | 0 .00 RPM | 29 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000023829 | 1 retrocopy |
retro_dnov_2238 ,
|
Myotis lucifugus | ENSMLUG00000026421 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017866 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022920 | 1 retrocopy |