RetrogeneDB ID: | retro_itri_134 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393642.1:647058..647433(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000025608 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAX1BP3 | ||
Ensembl ID: | ENSSTOG00000022920 | ||
Aliases: | None | ||
Description: | Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:HGNC Symbol;Acc:30684] |
Percent Identity: | 82.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG |
MSYI.GQ.VTA..QRVEIHK..Q..NLILGFSIGGGIDQ.PSQ.PFSEDKTDK.IYVT.V..GGPAEIAG | |
Retrocopy | MSYILGQLVTAIMQRVEIHKMHQRKNLILGFSIGGGIDQVPSQHPFSEDKTDKSIYVTHVNVGGPAEIAG |
Parental | LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS |
LQIGDKIMQ.NGWDMTMVTHDQARK.LTK.SEEVVRLLV....LQKA.QQSMLS | |
Retrocopy | LQIGDKIMQGNGWDMTMVTHDQARKWLTKHSEEVVRLLVRQRLLQKALQQSMLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000023829 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013801 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026421 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040158 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023903 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017866 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022920 | 1 retrocopy |
retro_itri_134 ,
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