RetrogeneDB ID: | retro_sscr_365 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:26426076..26426389(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAX1BP3 | ||
Ensembl ID: | ENSSSCG00000017866 | ||
Aliases: | None | ||
Description: | Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:HGNC Symbol;Acc:30684] |
Percent Identity: | 70.75 % |
Parental protein coverage: | 84.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIY-VTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMV |
.L.QGENLILGF.IGG.ID.DPS.NPFS.D...KGIY.VT..SEGGP.E.A.LQ.GDKIMQ.N.W.MTM. | |
Retrocopy | ELCQGENLILGFRIGGRID*DPSPNPFS-D*AGKGIY>VTHISEGGPVEMAELQTGDKIMQMNSWAMTMI |
Parental | THDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS |
T..Q..K.L.K.SEEV.RLLV.RQSLQK.VQQSMLS | |
Retrocopy | TRNQRWKQLIKYSEEVSRLLVMRQSLQKVVQQSMLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 99 .15 RPM |
SRP014902_testis | 0 .00 RPM | 42 .72 RPM |
SRP018288_heart | 0 .00 RPM | 37 .80 RPM |
SRP018288_kidney | 0 .00 RPM | 46 .99 RPM |
SRP018288_liver | 0 .00 RPM | 8 .16 RPM |
SRP018288_lung | 0 .00 RPM | 100 .50 RPM |
SRP018856_adipose | 0 .00 RPM | 38 .48 RPM |
SRP035408_brain | 0 .00 RPM | 4 .48 RPM |
SRP035408_liver | 0 .00 RPM | 8 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000023829 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013801 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026421 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040158 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023903 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017866 | 1 retrocopy |
retro_sscr_365 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000022920 | 1 retrocopy |