Parental gene:

TAX1BP3, ENSSSCG00000017866

Aliases:None
Description:Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:HGNC Symbol;Acc:30684]
Organism:Pig (Sus scrofa)
Coordinates:12:51614251..51619119(-)


>ENSSSCG00000017866
ATGTCCTACATTCCGGGCCAGCCGGTCACCGCCGTGGTGCAAAGAGTTGAAATTCATAAGCTGCGTCAAGGTGAGAACTT
AATCCTGGGCTTCAGCATTGGAGGTGGAATTGACCAGGATCCCTCTCAGAATCCTTTCTCAGAAGATAAGACAGACAAGG
GCATTTATGTCACGCGGGTATCTGAAGGAGGCCCAGCGGAAATTGCCGGGCTGCAGATCGGGGACAAGATCATGCAGGTG
AACGGCTGGGACATGACCATGGTCACGCACGACCAGGCCCGGAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGTGCGGCT
GCTGGTGACGCGGCAGTCGCTGCAGAAGGCGGTGCAGCAGTCCATGCTGTCCTAG

Library Parental gene expression (RPM)
SRP014902_placenta 99 .15 RPM
SRP014902_testis 42 .72 RPM
SRP018856_adipose 38 .48 RPM
SRP018288_kidney 46 .99 RPM
SRP018288_lung 100 .50 RPM
SRP018288_liver 8 .16 RPM
SRP018288_heart 37 .80 RPM
SRP035408_liver 8 .45 RPM
SRP035408_brain 4 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000023829 possible_ortholog 1 retrogene
retro_dnov_2238,
Dipodomys ordii ENSDORG00000013801 ortholog_one2one 2 retrogenes
retro_dord_56, retro_dord_728,
Myotis lucifugus ENSMLUG00000026421 ortholog_one2many 1 retrogene
retro_mluc_221,
Mus musculus ENSMUSG00000040158 ortholog_one2one 1 retrogene
retro_mmus_1929,
Oryctolagus cuniculus ENSOCUG00000023903 ortholog_one2one 1 retrogene
retro_ocun_781,
Ictidomys tridecemlineatus ENSSTOG00000022920 ortholog_one2one 1 retrogene
retro_itri_134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_365 70.75 84.68
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Download FASTA sequences of all ENSSSCG00000017866 retrocopies