RetrogeneDB ID: retro_mluc_221

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02064788:6996..7401(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030585
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000026421
• Aliases: None
• Description: None

Sequence

>retro_mluc_221
GCGGTACTTGGCTGCCAGATTGGGGTCGAGATGTCCTACATCCCGGGCCAGCCGGTCACGGCCGTGGTGCAAAGAGTTGA
AATTCATAAGCTGCGTCCAGGTGAGAATTTAATCCTGGGCTTCAGCATTGGAGGTGGAATTGACCAGGATCCCTCCCAGA
ATCCTTTCTCAGAAGACAAGACAGATAAGGGCATTTATGTCACACGGGTATCGGAAGGAGGCCCTGCTGAAATTGCTGGG
CTACAGATTGGAGACAAGATCATGCAGGTGAACGGCTGGGACGTGACCATGGTCACACACGACCAGGCCCGGAATCGGCT
CACCAAGCGCTCGGAGGAGGAGGTGCGCTTGCTGGTGACGAGGCAGTCGCTGCAGAAGGCCGTGCAGCAGTCCATGCTGT
CCTAG

Alignment

ORF - retro_mluc_221 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.01 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AVLGCQIGVEMSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV
          AVLGCQIGVEMSYIPGQPVTAVVQRVEIHKLR.GENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV
Retrocopy AVLGCQIGVEMSYIPGQPVTAVVQRVEIHKLRPGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV

Parental  SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS
          SEGGPAEIAGLQIGDKIMQVNGWD.TMVTHDQAR.RLTKRSEE.VRLLVTRQSLQKAVQQSMLS
Retrocopy SEGGPAEIAGLQIGDKIMQVNGWDVTMVTHDQARNRLTKRSEEEVRLLVTRQSLQKAVQQSMLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_221 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000023829	1 retrocopy	retro_dnov_2238,
Dipodomys ordii	ENSDORG00000013801	2 retrocopies	retro_dord_56, retro_dord_728,
Myotis lucifugus	ENSMLUG00000026421	1 retrocopy	retro_mluc_221 ,
Mus musculus	ENSMUSG00000040158	1 retrocopy	retro_mmus_1929,
Oryctolagus cuniculus	ENSOCUG00000023903	1 retrocopy	retro_ocun_781,
Sus scrofa	ENSSSCG00000017866	1 retrocopy	retro_sscr_365,
Ictidomys tridecemlineatus	ENSSTOG00000022920	1 retrocopy	retro_itri_134,