RetrogeneDB ID:

retro_dnov_244

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2940:1978..2305(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSDNOG00000024143
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_dnov_244
GGCTCGGGGGACGCCGAACGGGCCGCGCTCGCCCTAGCGTCGGGTGGAGCCGCTGCGCCCGCGGCTAGAGGGCCGGAAGG
CGCGCTGCACAACTTCGCCCTCAGCGTGCCTTTCCCGACCCCCCTGGAGGCGGAGATCGCCTGCGGATCCCTGGCCCCAG
ATGGCGAGCCCCACCGAGCAGCGATCCAGAAGGAGCTGACCGTGGCTGGCGGCGTCCTGGCCGTCCGATGGACTGCTGAA
GATCCTCGCCTCCTCCGAATTTCCATCACGAACTTTCTCGACCAGCTTTCCCTGGTGGTGCGGACCATGCAGCGCTTCGG
GCCCCCC

ORF - retro_dnov_244 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.05 %
Parental protein coverage: 78.99 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGAPQAARAPHAPGSGGDAVPVAGGAGSRLLTFTLMVPFGSALEAEMACSSLMPDIHRQGQAVQKEITVNG
G...A.RA..A..SGG.A.P.A.G....L..F.L.VPF...LEAE.AC.SL.PD......A.QKE.TV.G
RetrocopyGSGDAERAALALASGGAAAPAARGPEGALHNFALSVPFPTPLEAEIACGSLAPDGEPHRAAIQKELTVAG
ParentalSVLAVRWTAEDLGILRISINTFCNQLSLIVWNIQRIGLP
.VLAVRWTAED...LRISI..F..QLSL.V...QR.G.P
RetrocopyGVLAVRWTAEDPRLLRISITNFLDQLSLVVRTMQRFGPP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 9 .72 RPM 0 .00 RPM
SRP012922_cerebellum 3 .99 RPM 0 .00 RPM
SRP012922_heart 2 .78 RPM 0 .00 RPM
SRP012922_kidney 20 .81 RPM 0 .00 RPM
SRP012922_liver 6 .66 RPM 0 .00 RPM
SRP012922_lung 8 .25 RPM 0 .00 RPM
SRP012922_quadricep_muscle 4 .50 RPM 0 .00 RPM
SRP012922_spleen 8 .93 RPM 0 .00 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_244 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG00000024143 1 retrocopy
retro_dnov_244 ,
Dipodomys ordii ENSDORG000000090931 retrocopy
Homo sapiens ENSG000001969761 retrocopy
Gorilla gorilla ENSGGOG000000135071 retrocopy
Macaca mulatta ENSMMUG000000077391 retrocopy
Mus musculus ENSMUSG000000152892 retrocopies
Nomascus leucogenys ENSNLEG000000142851 retrocopy
Ochotona princeps ENSOPRG000000037782 retrocopies
Pongo abelii ENSPPYG000000208811 retrocopy
Rattus norvegicus ENSRNOG000000372491 retrocopy
Sus scrofa ENSSSCG000000255281 retrocopy



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