RetrogeneDB ID: | retro_dnov_244 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_2940:1978..2305(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000024143 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.05 % |
Parental protein coverage: | 78.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GAPQAARAPHAPGSGGDAVPVAGGAGSRLLTFTLMVPFGSALEAEMACSSLMPDIHRQGQAVQKEITVNG |
G...A.RA..A..SGG.A.P.A.G....L..F.L.VPF...LEAE.AC.SL.PD......A.QKE.TV.G | |
Retrocopy | GSGDAERAALALASGGAAAPAARGPEGALHNFALSVPFPTPLEAEIACGSLAPDGEPHRAAIQKELTVAG |
Parental | SVLAVRWTAEDLGILRISINTFCNQLSLIVWNIQRIGLP |
.VLAVRWTAED...LRISI..F..QLSL.V...QR.G.P | |
Retrocopy | GVLAVRWTAEDPRLLRISITNFLDQLSLVVRTMQRFGPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 9 .72 RPM | 0 .00 RPM |
SRP012922_cerebellum | 3 .99 RPM | 0 .00 RPM |
SRP012922_heart | 2 .78 RPM | 0 .00 RPM |
SRP012922_kidney | 20 .81 RPM | 0 .00 RPM |
SRP012922_liver | 6 .66 RPM | 0 .00 RPM |
SRP012922_lung | 8 .25 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 4 .50 RPM | 0 .00 RPM |
SRP012922_spleen | 8 .93 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000024143 | 1 retrocopy |
retro_dnov_244 ,
|
Dipodomys ordii | ENSDORG00000009093 | 1 retrocopy | |
Homo sapiens | ENSG00000196976 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013507 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007739 | 1 retrocopy | |
Mus musculus | ENSMUSG00000015289 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014285 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003778 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020881 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037249 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025528 | 1 retrocopy |