RetrogeneDB ID: | retro_sscr_94 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 12:21509540..21510023(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000017446 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000025528 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.66 % |
Parental protein coverage: | 93.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SGAAGGSEGPGRRGAPGGRGRPRGAGA-AAVAAAGVPPVAPAQRTSEEGGDPASAAKRPRSRAHVFALSV |
S..AGG.EGPG.RG.PGG...PRG.G..AA.AA.GVPPVAP....S..GG..AS.AKRP..R..VF.LSV | |
Retrocopy | SSTAGGPEGPGCRGGPGGPSSPRGDGCVAADAAEGVPPVAPGWHPSAAGGESASTAKRPGNRPLVFTLSV |
Parental | PFPSSWEAEIARGSLAPDAEPHRGAVGKELTVSGSDLAVHWRADDSRLLRISIVNFLDQLSLVIRTMQRF |
PFPSS.EAEIARGSLAPDAEPHRGA.GK.L.VS.S.LAVHWRA.DSRLLRISI.NFLDQLSL.IRTMQRF | |
Retrocopy | PFPSSLEAEIARGSLAPDAEPHRGAAGKKLSVSASVLAVHWRAEDSRLLRISILNFLDQLSLAIRTMQRF |
Parental | GPPVSR |
GPPV.R | |
Retrocopy | GPPVIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 27 .87 RPM | 24 .82 RPM |
SRP014902_testis | 20 .23 RPM | 49 .36 RPM |
SRP018288_heart | 0 .21 RPM | 7 .07 RPM |
SRP018288_kidney | 0 .99 RPM | 12 .61 RPM |
SRP018288_liver | 0 .00 RPM | 8 .16 RPM |
SRP018288_lung | 9 .37 RPM | 7 .54 RPM |
SRP018856_adipose | 3 .87 RPM | 15 .30 RPM |
SRP035408_brain | 2 .16 RPM | 11 .97 RPM |
SRP035408_liver | 0 .18 RPM | 8 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000024143 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000009093 | 1 retrocopy | |
Homo sapiens | ENSG00000196976 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013507 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007739 | 1 retrocopy | |
Mus musculus | ENSMUSG00000015289 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014285 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003778 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020881 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037249 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025528 | 1 retrocopy |
retro_sscr_94 ,
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