RetrogeneDB ID: | retro_dnov_820 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_110646:4091..4356(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM9 | ||
Ensembl ID: | ENSDNOG00000014822 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 9 homolog (yeast) [Source:HGNC Symbol;Acc:11819] |
Percent Identity: | 86.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFT-TREVKPEETTCSEHCLQKYLKMTQRIS-MRFQ |
MAAQIP.SDQIKQFKEFLGTYNKL.ETCFLDCVKDFT..RE.KPEETTCSE.CL.KYLKMT.RIS.MRFQ | |
Retrocopy | MAAQIPDSDQIKQFKEFLGTYNKLAETCFLDCVKDFT<KREIKPEETTCSEYCLKKYLKMT*RIS<MRFQ |
Parental | EYHIQQNEALAAKAGLLGQPR |
EYHIQQN..LAAKAGLLGQP. | |
Retrocopy | EYHIQQNVSLAAKAGLLGQPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .58 RPM | 18 .28 RPM |
SRP012922_cerebellum | 0 .14 RPM | 24 .19 RPM |
SRP012922_heart | 0 .00 RPM | 13 .69 RPM |
SRP012922_kidney | 0 .00 RPM | 8 .49 RPM |
SRP012922_liver | 0 .15 RPM | 8 .05 RPM |
SRP012922_lung | 0 .15 RPM | 11 .76 RPM |
SRP012922_quadricep_muscle | 0 .52 RPM | 13 .33 RPM |
SRP012922_spleen | 0 .23 RPM | 16 .02 RPM |