RetrogeneDB ID: | retro_ecab_161 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:52905498..52905753(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM9 | ||
Ensembl ID: | ENSECAG00000017063 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 9 homolog (yeast) [Source:HGNC Symbol;Acc:11819] |
Percent Identity: | 78.82 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEY |
MAAQ.PESDQIKQ.K.FL..YNKL.ETCFLDCV.DFTT..VKPEETTCSEH.LQKY....QRISMRFQEY | |
Retrocopy | MAAQRPESDQIKQSK*FLRIYNKLRETCFLDCVQDFTTSKVKPEETTCSEHSLQKYF*TMQRISMRFQEY |
Parental | HIQQNEALAAKAGLL |
H.Q.NEALAAK.GL. | |
Retrocopy | HRQENEALAAK*GLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 4 .01 RPM |
SRP021940_cerebellum | 0 .00 RPM | 5 .09 RPM |
SRP021940_embryo | 0 .03 RPM | 6 .24 RPM |
SRP021940_placental_villous | 0 .00 RPM | 4 .76 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 4 .61 RPM |
SRP021940_testis | 0 .00 RPM | 31 .27 RPM |