RetrogeneDB ID: | retro_btau_1355 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:78315419..78315683(-) | ||
Located in intron of: | ENSBTAG00000021216 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM9 | ||
Ensembl ID: | ENSBTAG00000010503 | ||
Aliases: | None | ||
Description: | Mitochondrial import inner membrane translocase subunit Tim9 [Source:UniProtKB/Swiss-Prot;Acc:Q2KIV2] |
Percent Identity: | 85.23 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEY |
MAAQI.ES.QIK.FKEFLGTY.K..ETCFLDC.KDFT..E.KPEETTCSE.CLQKYLKMTQ.ISMRFQEY | |
Retrocopy | MAAQILESNQIKHFKEFLGTYSKFIETCFLDCIKDFTRKEIKPEETTCSEYCLQKYLKMTQQISMRFQEY |
Parental | HIQQNEALAAKAGLLGQP |
HIQQNEALAAK.GLLGQP | |
Retrocopy | HIQQNEALAAKTGLLGQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 19 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 9 .87 RPM |
SRP017611_brain | 0 .05 RPM | 11 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .40 RPM |
SRP017611_liver | 0 .00 RPM | 8 .99 RPM |
SRP030211_testis | 0 .01 RPM | 20 .15 RPM |