RetrogeneDB ID: | retro_fcat_465 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:35938287..35938527(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM9 | ||
Ensembl ID: | ENSFCAG00000010833 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 9 homolog (yeast) [Source:HGNC Symbol;Acc:11819] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 89.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEY |
MAA.IPESDQIKQ.KEFLGTYNKLTET.F.DC.KDFT.REVKPEETT.SEHC.Q.YL..T.RIS.RFQE. | |
Retrocopy | MAA*IPESDQIKQLKEFLGTYNKLTETRFSDCIKDFTAREVKPEETTHSEHCSQIYLYITLRISRRFQEN |
Parental | HIQQNEALAA |
HIQQNEA.AA | |
Retrocopy | HIQQNEAMAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .77 RPM |
SRP017611_liver | 0 .00 RPM | 11 .93 RPM |