RetrogeneDB ID: | retro_dnov_90 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_142:138973..139543(+) | ||
Located in intron of: | ENSDNOG00000018282 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC1 | ||
Ensembl ID: | ENSDNOG00000002680 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669] |
Percent Identity: | 72.4 % |
Parental protein coverage: | 67.14 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | GLKLTFDSSFSPNTGKK-NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKS |
GLKLTFDSSFS.NTG...NAKI.TGYKREHINLGC..DF..A..SI.G..VLG.EGWL..YQMNFETA.S | |
Retrocopy | GLKLTFDSSFSSNTGRAGNAKIQTGYKREHINLGCNTDF--ARLSIQGVPVLGCEGWLTDYQMNFETARS |
Parental | RVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQID-PDA |
.VTQ..FAV.YKTD.F.LHTNVNDGTEFG..I.QKVNKKLE.AVNL.WT.G.SNT..........D.P.. | |
Retrocopy | QVTQNSFAVDYKTD*F*LHTNVNDGTEFGDFI*QKVNKKLEIAVNLTWTGGDSNTXXXXNSSQVSD*PCP |
Parental | CFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA |
.FSAKVN.SSLIGLGYTQTLKPGIKLTLS.LLDGKNVN....K.GLGLE.QA | |
Retrocopy | FFSAKVNKSSLIGLGYTQTLKPGIKLTLSSLLDGKNVNGNDCKFGLGLELQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 297 .92 RPM |
SRP012922_cerebellum | 2 .61 RPM | 100 .49 RPM |
SRP012922_heart | 0 .46 RPM | 155 .46 RPM |
SRP012922_kidney | 3 .29 RPM | 108 .70 RPM |
SRP012922_liver | 1 .24 RPM | 31 .12 RPM |
SRP012922_lung | 2 .29 RPM | 46 .73 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 402 .08 RPM |
SRP012922_spleen | 2 .29 RPM | 42 .92 RPM |