RetrogeneDB ID: | retro_rnor_1664 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:196031680..196032527(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Vdac1 | ||
Ensembl ID: | ENSRNOG00000006375 | ||
Aliases: | None | ||
Description: | Voltage-dependent anion-selective channel protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9Z2L0] |
Percent Identity: | 89.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLT |
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGL. | |
Retrocopy | MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLM |
Parental | FTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNT-GKKNAKIKTGYKREHINLGCDVDFDIAGPSIR |
FTEK.N.DNTLGTEI.VEDQLARGLKLTFDSSFSPNT.....AKIKTGYKREHINL.CDVDFDI.GPSIR | |
Retrocopy | FTEK*NRDNTLGTEIIVEDQLARGLKLTFDSSFSPNT<XXXXAKIKTGYKREHINLSCDVDFDITGPSIR |
Parental | GALVLGYEGWLAGYQMNFETSKSRVTQSNFAVG-YKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNL |
GALVLG.EGWLAG.QMNFETSKS.V.QSNFAV...K.DEFQ.HTNVNDGTEFGGSIYQKVNKKLET.VNL | |
Retrocopy | GALVLGCEGWLAGHQMNFETSKSAVIQSNFAVA<QKMDEFQFHTNVNDGTEFGGSIYQKVNKKLETDVNL |
Parental | AWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLG |
.WTA.NSNT..GIAAKYQVDPDACFSAK.NNSS.IG.GYTQ.LKP.IKLTLSALLDGKNVNAGGHKLGLG | |
Retrocopy | SWTAVNSNTHVGIAAKYQVDPDACFSAKLNNSSPIGVGYTQNLKPSIKLTLSALLDGKNVNAGGHKLGLG |
Parental | LEFQA |
LEFQA | |
Retrocopy | LEFQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 154 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 345 .21 RPM |
SRP017611_liver | 0 .00 RPM | 73 .63 RPM |