RetrogeneDB ID: | retro_mdom_1120 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:157687632..157688321(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000006744 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC1 | ||
Ensembl ID: | ENSMODG00000014157 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669] |
Percent Identity: | 54.01 % |
Parental protein coverage: | 80.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | TYADLGKSARDVF-TKGYGFGLIKLDLKTKSENGLEF-TSSGS-ANTETSKVSGS-LETKYK-WSEYGLT |
TY.DLG..A..VF.TK..G....K.DL.TKS..G.EF.TS..S...T.T.K.SG..LE.K......YG.T | |
Retrocopy | TYYDLGNAAKNVF>TKDVGL-VLKIDLRTKSSSGVEFSTSDQS>SYTGTGKASGN<LENKVQNLYGYGFT |
Parental | FIEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAK-IKSGYKREHINLGCDMDFDISGPSIR |
FI.KW.T.NTL..EI..E..LA.GLKLT.D..F.PNT.KK..K.IK....R..I.....M....SGP.I. | |
Retrocopy | FIQKWKTENTLRIEINMENKLADGLKLTLDTIFVPNTDKKSGK<IKTS-SR*DISVLVEMLTNFSGPTIY |
Parental | GAVVLGYEGWLAGYQMNFETSKSRVTQSNFAV-GYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNL |
G..VL.YEGW.AGYQM.F.T.KS...Q.NFA..GYK...FQLH..VNDGTEFG.S.YQ.VN.K.....NL | |
Retrocopy | GWAVLAYEGWFAGYQMSFDTAKSKRSQNNFAL<GYKGADFQLHKRVNDGTEFGRSFYQIVNEKIKNLINL |
Parental | AWTAG-NSNTRFGIAAKYQIDPEASFS |
AWTA....NT.FGIAAKY..D...S.S | |
Retrocopy | AWTAPVIYNTHFGIAAKYKVDHKTSLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1450 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1413 .55 RPM |
SRP007412_heart | 0 .00 RPM | 2849 .54 RPM |
SRP007412_kidney | 0 .00 RPM | 1752 .70 RPM |
SRP007412_liver | 0 .00 RPM | 458 .17 RPM |
SRP007412_testis | 0 .00 RPM | 70 .13 RPM |