RetrogeneDB ID: | retro_ptro_345 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:136039374..136039877(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC1 | ||
Ensembl ID: | ENSPTRG00000017235 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669] |
Percent Identity: | 66.27 % |
Parental protein coverage: | 59.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTF |
AVPP.Y.DL.K..RDVFTK.Y..GLIKL.LKTK..N.L..TSSGSAN.E..KVTGSLETK.RW..YGLTF | |
Retrocopy | AVPPMYTDLDKCTRDVFTKWYRLGLIKLHLKTKYGNRLDVTSSGSANPEAIKVTGSLETKNRWIKYGLTF |
Parental | TEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTG-KKNAKIKTGYKREHINLGCDMDFDIAGPSIRG |
TEKWNTD.TLG.E.........GLKLT.DS..SPNTG..KNAKIKTGYK.E.INLGC...FDI..P.I.G | |
Retrocopy | TEKWNTDKTLGAELLEKMSFLHGLKLTCDSASSPNTG<GKNAKIKTGYK*EYINLGCNVGFDISRPFIQG |
Parental | ALVLGYEGWLAGYQMNFETAKSRVTQSNF |
AL.L.Y..WLAGYQ..FE...S.VT..NF | |
Retrocopy | ALLLSYKDWLAGYQIHFEIKESQVT*NNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 174 .87 RPM |
SRP007412_cerebellum | 0 .00 RPM | 107 .72 RPM |
SRP007412_heart | 0 .00 RPM | 337 .69 RPM |
SRP007412_kidney | 0 .00 RPM | 160 .28 RPM |
SRP007412_liver | 0 .00 RPM | 83 .01 RPM |
SRP007412_testis | 0 .00 RPM | 21 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_458 |
Pongo abelii | retro_pabe_273 |
Callithrix jacchus | retro_cjac_1669 |