RetrogeneDB ID: | retro_dnov_942 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_125087:795..1430(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000013764 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19orf40 | ||
Ensembl ID: | ENSDNOG00000014134 | ||
Aliases: | None | ||
Description: | chromosome 19 open reading frame 40 [Source:HGNC Symbol;Acc:28467] |
Percent Identity: | 75.23 % |
Parental protein coverage: | 99.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MESGPPVATGPIDVPLGHIVANEKWRGSQLALGMQGKIKLTFEDGLTPVDFHLSNRSCVLYITEADLVAG |
MESG.PVATGPI..PL.HI.ANE.W.G.QL...MQGKIK.TFEDGLT.VDFHLSNR.CVLYITEADLVAG | |
Retrocopy | MESGAPVATGPIYMPLEHIMANENWHGLQLVPRMQGKIKFTFEDGLTLVDFHLSNRFCVLYITEADLVAG |
Parental | NAYRKRLVRVRNASNLQGIVLVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQVEAACLIVQLVQEQTKE |
NAYRKRLV..RNA.NLQGIVLVE.TQMSEQYFPA.QKFTVLDL.MVLLP.ASQVEAACLI..LVQEQTKE | |
Retrocopy | NAYRKRLVWARNAGNLQGIVLVEQTQMSEQYFPAEQKFTVLDLIMVLLPLASQVEAACLIIHLVQEQTKE |
Parental | HSKNPFLRKKRALLSEPSLLRTVQQIPGVGKVKAP-LLLQKFPSIQQLSNASIQELEQVVGQAAAQQIYV |
H......R.....LS.PS............KVK.P.LLLQKFPSIQ.LSNA.IQELEQVVGQAAAQQI.. | |
Retrocopy | HRTLFSGRNGPCSLSHPSFELCSRSLE-LEKVKLP<LLLQKFPSIQKLSNAAIQELEQVVGQAAAQQIDA |
Parental | FFTQ |
FFTQ | |
Retrocopy | FFTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 5 .64 RPM |
SRP012922_cerebellum | 0 .27 RPM | 6 .74 RPM |
SRP012922_heart | 0 .00 RPM | 0 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .74 RPM |
SRP012922_liver | 0 .15 RPM | 2 .17 RPM |
SRP012922_lung | 0 .00 RPM | 3 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 6 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000728 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011965 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014134 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000002716 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006401 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000013287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017939 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009727 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016372 | 1 retrocopy |