RetrogeneDB ID: | retro_pcap_444 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_89485:9849..10399(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19orf40 | ||
Ensembl ID: | ENSPCAG00000009727 | ||
Aliases: | None | ||
Description: | chromosome 19 open reading frame 40 [Source:HGNC Symbol;Acc:28467] |
Percent Identity: | 55.91 % |
Parental protein coverage: | 84.65 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | PDDTEPIHVPFGYVVASEKWRGSQLVQGMQGK-IKLLFEDRLTAVDFYLSNRSCVLYITEADLVAGNGYR |
PDDT..I.VP..Y.V.S.K..G...V.G...K.IKL.FED.L...DF.L...SC.L.IT.ADLV..NG.R | |
Retrocopy | PDDTGLIPVPLAYTVPSKKQHGL*VVHGSKRK<IKLSFEDYLMPADFHLCKISCSLCITQADLVT*NGCR |
Parental | KRLVRVRNPGNLQGIVIFEKTQMSEQYFAAVQKFTVLDLGMVLLPVASQAEASS-LIIQLVQEQIKELAK |
KRLV..RN...LQG....EK....EQYF..V.KFTVL.L.MVLL.V...A..S..LII.LVQEQ.KE..K | |
Retrocopy | KRLVPIRNCSYLQGAILVEKIHIGEQYFSDVLKFTVLGLAMVLLSVTGLADGSV*LII*LVQEQTKEPNK |
Parental | NP-FVRKKCAVLAEPALLRTVQ-QIPGVGKVKAPLLLQKFPSIQQL |
N..F.RK....L.EP.LL.TV..QI.G.GKV.AP.LLQKF.S..QL | |
Retrocopy | NT>FLRKPHGLLSEPSLL*TVL>QITGTGKVAAPFLLQKFSSARQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000728 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011965 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014134 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000002716 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006401 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000013287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017939 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009727 | 1 retrocopy |
retro_pcap_444 ,
|
Sarcophilus harrisii | ENSSHAG00000016372 | 1 retrocopy |