RetrogeneDB ID: | retro_shar_299 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841257.1:1086585..1086869(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19orf40 | ||
Ensembl ID: | ENSSHAG00000016372 | ||
Aliases: | None | ||
Description: | chromosome 19 open reading frame 40 [Source:HGNC Symbol;Acc:28467] |
Percent Identity: | 58.59 % |
Parental protein coverage: | 53.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VAGNGYKK-RIVRLRNASNLQGIIIVEKTQMSEQYFPAVQKFVVLELGMALLPVSSQMEASQLIIQL-VH |
V.G.GY.K.R...LRNA.NL.GI...EKTQMSEQYF...QKF..LEL....L....QMEA.Q.IIQL.V. | |
Retrocopy | VVGSGYRK<RAAQLRNANNL*GIMVDEKTQMSEQYFLTIQKF-ILELRVVWLLMARQMEAFQFIIQL<VC |
Parental | EQTKERNRNPFLRKK-NCQLSESSVLQTI |
EQ..ER.RNPFLR.K...Q.SES.V..T. | |
Retrocopy | EQNEERDRNPFLRYK>HSQFSESPVS*TV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000728 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011965 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014134 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000002716 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006401 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000013287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017939 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009727 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016372 | 1 retrocopy |
retro_shar_299 ,
|