RetrogeneDB ID: | retro_dnov_957 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_127:184803..185707(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSDNOG00000016279 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 71.15 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 6 |
Parental | SETHNV-KKRNFCNNIEDHSVDLPRKRISNFTIKNMKEVKKSRKQLAAYINRTVGQAVKSTDKLY-KVIY |
S.TH.V.KKRNFC.NIE.HS.DLPRKR.SNFT.KNMKEVK.S.KQL..YIN.TVGQAV....K.Y..... | |
Retrocopy | SDTHSV>KKRNFCSNIENHSTDLPRKRVSNFT-KNMKEVKESPKQLGFYINGTVGQAVGKAQKNY<PTVT |
Parental | RRKK-VHHPSPNPYYRRKQSPRSGGCDMANKENEVACAS-HLPEKLRHDSRTYLVNSSDSGSSQTESPSS |
.R.K.VHHP.P.P..RRKQS.RSGG.D.ANKEN.VACA...L.EKL.H.SRTYLVNSSDSGSSQT.SPSS | |
Retrocopy | YRRKEVHHPFPDPC*RRKQSLRSGGYDVANKENQVACAG<PLLEKLSHVSRTYLVNSSDSGSSQTKSPSS |
Parental | KYSGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRNISELVAYLV---RIEDLGVVVD-CLPVLTNS- |
KYSGF.SEVS...ETMA.VLFSRNLRLNV.LTF..KR.ISEL.AYLV.....EDLGV.VD..L..LTNS. | |
Retrocopy | KYSGFLSEVS*HDETMA*VLFSRNLRLNVPLTF*WKRSISELRAYLVILLLLEDLGVAVD<WLSALTNS< |
Parental | LQEGKQYISLGCCVDLLPLVKSLLKSKFEEYVIVGLNWLQAVIKRWWSE-LSSKTEIKNDGXXQILKQQL |
.Q..KQY.SL.....LLPLVKSLLKSK.E.YVIVGLNW..AVI.RWWSE.LSSKTEI.ND...Q.LK.Q. | |
Retrocopy | FQKEKQYSSL---CRLLPLVKSLLKSKSEDYVIVGLNWHEAVI*RWWSE>LSSKTEIINDRNIQNLK*QF |
Parental | SGLWDQENHLTLVPGYTGNIAKDVDAYLLQLH |
S.LW.QENHL.LV.GYTGNIAKDVD.YLLQ.H | |
Retrocopy | SELWEQENHLILVAGYTGNIAKDVDTYLLQSH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 2 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .96 RPM |
SRP012922_heart | 0 .00 RPM | 1 .86 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .82 RPM |
SRP012922_liver | 0 .00 RPM | 0 .62 RPM |
SRP012922_lung | 0 .00 RPM | 3 .21 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .58 RPM |