Parental gene: | KATNBL1, ENSOCUG00000017654 |
| Aliases: | None |
| Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 17:39385628..39396720(-) |
>ENSOCUG00000017654
ATGGCATCTGAAACCCACAATGTTAAAAAACGGAACTTTTGTACTAATATTGAGGATCATTCCACTGATCTTCCTAGAAA
AAGGATCTCTAATTTCACCAATAAGAACATGAAGGAGGTTAAGAAATCTCCCAAACATTTGGCTGCTTACATAAACAGAA
CAGTTGGACAAGCTGTGAAAACCCCAGATAAACTACGTAAGGTGATCTATCGCAGAAAGAAAGTTCATCATCCCTTTCCA
AATCCTTGTTACAGAAAAAAACAGTCCCCTAGCACTGGGGGCTGTGACATGGCAAATAAAGAAAATGAACTGGCTTGTGC
AGGTCACCTGCCTGAAAAATTACGCCATGATAGTCGCACATATTTGGTTAATTCCAGTGACCCTGGCTCTTCACAGACAG
AAAGCCCATCATCAAAATATAGTAGTTTTTTTTCTGAGGTTTCTCAGGACCATGAAACAATGGCCCAGGTTTTATTCAGC
AGGAATTTGCGATTGAATGTAGCTTTAACTTTCTGGAGAAAGAGAAGCATAAGTGAACTTGTAGCCTATTTGGTGAGGAT
AGAAGATCTTGGAGTTGTAGTAGATTGCCTACCTGTACTCACCAATAGTTTACAGGAGGAAAAACACTATATCTCACTTG
GCTGCTGCGTGGACTTGTTGCCTCTAGTAAAGTCATTACTTAAAAGCAGATTTGAAGAATATGTAATAGTTGGTTTAAAC
TGGCTTCAAGCAGTCATAAAAAGGTGGTGGTCAGAACTGTCATCCAAATCAGAAATCAGAAATGATGGAAATATTCAGAT
TTTAAGACAACAATTAAGTGGGTTGTGGGAACAAGAAAACCATCTTACTTTGGTTCCAGGATATACTGGTAATATAGCTA
AGGATGTAGATGCTTATTTATTACAGTTGCATTGA
ATGGCATCTGAAACCCACAATGTTAAAAAACGGAACTTTTGTACTAATATTGAGGATCATTCCACTGATCTTCCTAGAAA
AAGGATCTCTAATTTCACCAATAAGAACATGAAGGAGGTTAAGAAATCTCCCAAACATTTGGCTGCTTACATAAACAGAA
CAGTTGGACAAGCTGTGAAAACCCCAGATAAACTACGTAAGGTGATCTATCGCAGAAAGAAAGTTCATCATCCCTTTCCA
AATCCTTGTTACAGAAAAAAACAGTCCCCTAGCACTGGGGGCTGTGACATGGCAAATAAAGAAAATGAACTGGCTTGTGC
AGGTCACCTGCCTGAAAAATTACGCCATGATAGTCGCACATATTTGGTTAATTCCAGTGACCCTGGCTCTTCACAGACAG
AAAGCCCATCATCAAAATATAGTAGTTTTTTTTCTGAGGTTTCTCAGGACCATGAAACAATGGCCCAGGTTTTATTCAGC
AGGAATTTGCGATTGAATGTAGCTTTAACTTTCTGGAGAAAGAGAAGCATAAGTGAACTTGTAGCCTATTTGGTGAGGAT
AGAAGATCTTGGAGTTGTAGTAGATTGCCTACCTGTACTCACCAATAGTTTACAGGAGGAAAAACACTATATCTCACTTG
GCTGCTGCGTGGACTTGTTGCCTCTAGTAAAGTCATTACTTAAAAGCAGATTTGAAGAATATGTAATAGTTGGTTTAAAC
TGGCTTCAAGCAGTCATAAAAAGGTGGTGGTCAGAACTGTCATCCAAATCAGAAATCAGAAATGATGGAAATATTCAGAT
TTTAAGACAACAATTAAGTGGGTTGTGGGAACAAGAAAACCATCTTACTTTGGTTCCAGGATATACTGGTAATATAGCTA
AGGATGTAGATGCTTATTTATTACAGTTGCATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 1 .85 RPM |
| SRP017611_kidney | 3 .85 RPM |
| SRP017611_brain | 2 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006413 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000021110 | ortholog_one2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000011153 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000016279 | ortholog_one2one | 5 retrogenes | |
| Dipodomys ordii | ENSDORG00000013172 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000023450 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000001640 | ortholog_one2one | 7 retrogenes | |
| Homo sapiens | ENSG00000134152 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014230 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000015610 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001532 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000000013 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000008019 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010772 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015633 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000010379 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006309 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000006877 | ortholog_one2one | 3 retrogenes | |
| Sorex araneus | ENSSARG00000007891 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000003813 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001614 | ortholog_one2one | 7 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011059 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007170 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_343 | 73.29 | 52.63 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_614 | 96.30 | 88.82 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_877 | 99.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_975 | 65.07 | 73.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1065 | 70.55 | 53.29 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000017654 retrocopies