RetrogeneDB ID: | retro_tbel_1362 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4505:276829..277456(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSTBEG00000001614 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 55.41 % |
Parental protein coverage: | 85.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | TVGQAVRSPDKLRKVIYHRKKVHHSFPNPCYRKKQSPRSGGCDMANKENELACAGHLPE-KLHHDSRTYL |
TVG.AV.SPD...K...H..KVH..FP.PC......PR.GG..MANKENE.ACAG.LPE......SR... | |
Retrocopy | TVGRAVESPDQVQK*SIH--KVHRPFPIPCDSVNKIPRIGGFVMANKENEPACAGPLPE<RCDDASRARW |
Parental | VNSSDSGSSQTES-PSSKYSGFFSEVSQDHETMAQVLFSRNLRLNVALTF-WRKRSISELVAYLVRIDDL |
V..SDSG.SQTES.P.S.Y.GFF.....DH...AQVLFSR.LRLN..L.F.W.K.S.SE.V..L.R...L | |
Retrocopy | VKCSDSGPSQTES<PGSTYIGFF-WAFLDHTAVAQVLFSRTLRLNATLVF<WAKTSGSEPVTDLARV-GL |
Parental | GVVVDCLPVLTNS-LQEEKQYISLGCCVDLLPL-VKSL--LKSKFEEYV-IVGLNWLQAVIKRWWSELSS |
...V..LP.L..S..Q.EK....LGCCVDLL.L.VK.L..LKSKFE.Y...V.L.W.QAVIK..W.EL.S | |
Retrocopy | RAAVGRLPKLSRS<FQDEKPSALLGCCVDLLLL<VKRLLILKSKFEDYI<QVVLDWPQAVIK-GWLELLS |
Parental | KTEIINDGNIQI |
KTEI.....IQI | |
Retrocopy | KTEITDNERIQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |