RetrogeneDB ID: | retro_vpac_632 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_865:474618..475104(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSVPAG00000007170 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 86.59 % |
Parental protein coverage: | 53.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQYIS |
F.SEVSQD.ETM.QVLFSRNLRLNVALT.WRKRS.SELVA.LVRIEDLG..V.CLPV.TNSLQEEKQYIS | |
Retrocopy | FPSEVSQDQETMTQVLFSRNLRLNVALTSWRKRSVSELVASLVRIEDLGLGVVCLPVPTNSLQEEKQYIS |
Parental | LGCCVDLLPLVKSLLKSRFEEYIIVGLNWLQAVI-KRWWSELSSKTEIIHDGNIQILKQQLSGLWEQENH |
LGCCVDLLPLVKSLLKS.FEEY..VGLNWLQAVI.KRW.SELSSKTEII.DGNI.ILKQQ.S.LWEQENH | |
Retrocopy | LGCCVDLLPLVKSLLKSSFEEYVTVGLNWLQAVI>KRW*SELSSKTEIINDGNIRILKQQRS*LWEQENH |
Parental | LTLVPGYT-GNIAKDVDAYLLQLH |
LTLVPGY..GNIAKDV.AYLLQLH | |
Retrocopy | LTLVPGYK<GNIAKDVNAYLLQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |