RetrogeneDB ID: | retro_dord_159 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_4074:69546..70009(+) | ||
Located in intron of: | ENSDORG00000008724 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mtx2 | ||
Ensembl ID: | ENSDORG00000003848 | ||
Aliases: | None | ||
Description: | metaxin 2 [Source:MGI Symbol;Acc:MGI:1859652] |
Percent Identity: | 55.35 % |
Parental protein coverage: | 58.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QKAEMKAYMELVNNMLLTAELYLQWCDEATVEEIT-HSRYGSPYPWPLNHILAYQKQWEVKRKMKAIGWG |
..AEM.A..ELVN......EL..QW..E..V.E....SR.GSPY.WPLNH.LAYQK.......MKAIGWG | |
Retrocopy | KEAEMEADLELVNSVQVAVEL--QWWAEVPVGEVS>NSRHGSPYSWPLNHVLAYQKPSH-QGEMKAIGWG |
Parental | NKTLDQV----LEDVDQCCQALSQRLGTQPYFFNKQPTELDALVFGHLYTILTTRLTNDELCEKVKNYSN |
.............D.DQ..QA.SQRL.T.P..FNKQ..ELD...FG.LY.I.T..LTN.EL.EKVKNYSN | |
Retrocopy | KASGPRIGQGQIDDGDQFYQAVSQRLET*PDLFNKQSAELDVSIFGLLYAIATIQLTNGELSEKVKNYSN |
Parental | LLAFCRRIEQHYFEDRGRG |
LL.FC.R.EQHYFED...G | |
Retrocopy | LLVFC-RTEQHYFEDCDQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009655 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011099 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003848 | 2 retrocopies |
retro_dord_159 , retro_dord_192,
|
Homo sapiens | ENSG00000128654 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010185 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006020 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012674 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016381 | 1 retrocopy |