RetrogeneDB ID: | retro_ptro_2561 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:126892297..126892701(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTX2 | ||
Ensembl ID: | ENSPTRG00000012674 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.83 % |
Parental protein coverage: | 51.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LYLQWCDEATVG-EITHARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGKKTLDQVLEDVDQCCQALSQ |
LYLQW.DEA..G.EITHARYGSPYPWPL.HILAYQK...VK.KMKAI.WGKKTLDQVLED.DQCCQALS. | |
Retrocopy | LYLQWFDEAKSG<EITHARYGSPYPWPLHHILAYQKW*KVKCKMKAIRWGKKTLDQVLEDIDQCCQALSK |
Parental | RLGTQPYFFNKQPTELDALVFGHLYTILTTQLTNDELSEKVKNYSNLLAFCRRIEQHYFEDRGKGRL |
.L.TQPYFFNKQ..E.D.LVF.HLYTILTT.L.ND.LSE.VKNYSNLLA.CRRIE.HYF.D...GRL | |
Retrocopy | SLVTQPYFFNKQLPEFDTLVFAHLYTILTTRLMNDKLSE-VKNYSNLLALCRRIERHYFDDCDEGRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .16 RPM |
SRP007412_heart | 0 .00 RPM | 18 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .39 RPM |
SRP007412_liver | 0 .00 RPM | 11 .72 RPM |
SRP007412_testis | 0 .00 RPM | 52 .48 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3780 |
Macaca mulatta | retro_mmul_1643 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009655 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011099 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003848 | 2 retrocopies | |
Homo sapiens | ENSG00000128654 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010185 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006020 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012674 | 1 retrocopy |
retro_ptro_2561 ,
|
Sarcophilus harrisii | ENSSHAG00000016381 | 1 retrocopy |