RetrogeneDB ID: | retro_dord_245 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_6574:35460..36210(-) | ||
Located in intron of: | ENSDORG00000002515 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnaja4 | ||
Ensembl ID: | ENSDORG00000005972 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 4 [Source:MGI Symbol;Acc:MGI:1927638] |
Percent Identity: | 57.2 % |
Parental protein coverage: | 96.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCETCSGAKVTREKKIIEVHGERC |
.VE.C..C.G.G.QI.I.QIGPGMVQQ.Q..C.EC.G.GERI.PKDR...C.G.K...EKKI.EVH.... | |
Retrocopy | AVECCHKC*GTGTQIRIHQIGPGMVQQVQSGCMECQGHGERISPKDRWKSCNGRKIVQEKKILEVHIDKG |
Parental | MKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDDRVL |
MK.GQKI.FHGEGDQEP.LEPGD.IIVLDQKDH.VF.R...DL.M.M.IQL.EALCGF.K.I.TLD.... | |
Retrocopy | MKGGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTR*REDLCMCMDIQLVEALCGFPKPISTLDNQTI |
Parental | IITSKSGEVMKHGDLKCVRNEGMPIYKAPLERGALILQFLVVFPDKQWLSLEKLPQLEALLPPRQKVRVT |
.ITS..G...K.GD..C...EGMP.Y..P.E.G.LI..F.V.FP....LS..KL..LE.LLP.R..V..T | |
Retrocopy | VITSHPGQIVKPGDITCMLSEGMPTY*RPYEKGCLIIEFKVNFPENGFLSSDKLSLLEKLLPERKEVEET |
Parental | EDMDQVELKEFNPS-EQNWRQHREAYEEDDDGPRAGVQCQ |
..MDQVEL....P..E.......EAY..D....R.GVQCQ | |
Retrocopy | DEMDQVELVDLGPNQERRCHYNGEAYKDDEHHCRSGVQCQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012576 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005972 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004320 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015982 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000008789 | 6 retrocopies | |
Mus musculus | ENSMUSG00000032285 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006752 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000007594 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009268 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000008600 | 1 retrocopy |