RetrogeneDB ID: | retro_mmur_1460 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_64291:524..1459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMICG00000008789 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.21 % |
Parental protein coverage: | 78.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | FSSPMDI-FDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGIGGKKGSV-E |
F..PMDI.FDMFF.........RRGKN.VHQLSVTLEDL.NG.T.KLALQ.NV.C.KCEG.GGKKG.V.E | |
Retrocopy | FWLPMDI<FDMFFERS-KDVKKRRGKNAVHQLSVTLEDLHNGATRKLALQNNVTCDKCEGRGGKKGAV>E |
Parental | KCPLCKGRGMQIHIQQIGPGMVQQIQTVCVECKGQGE-RINPKDRCESCSGAKVIREKKIIEVHVEKGMK |
.CP.C...GMQI.I.QIGPGMVQQIQ.VC.EC.G.GE..I.PK.RC.SC.G.K...EKKI.EVH..KGMK | |
Retrocopy | CCPNCQCSGMQIRIHQIGPGMVQQIQSVCMECQGHGE<MISPKERCKSCNGKKIV*EKKILEVHIDKGMK |
Parental | DGQKILFH-GEGDQEPELEPGDVIIVLDQKDHSV-FQRRGHDLIMKMKIHLSEALCGFKKTVKTLDDRIL |
DGQKI.FH.GEGD.EP.LEPGD.IIVL.QKDH...F.RRG.DL.M.M.I.L.EALCGF.K...TLD.R.. | |
Retrocopy | DGQKITFH>GEGD*EPGLEPGDIIIVLHQKDHAI<FTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTI |
Parental | VITSKSGEVIKHGDLKCVRNEGMPIYKAPLEKGTLIIQFLVIFPEKHWLSPEKLPQLEALLPPRQKVRIT |
VITS..G...KHGD.KCV.NEG.PIY..P.EK..LII.F.V.FPE...LSP.KL..L..L.P....V..T | |
Retrocopy | VITSHPGQIVKHGDIKCVLNEGVPIYRRPYEKDHLIIEFKVNFPENGFLSPDKLSLLKKLPPEKKEVGET |
Parental | DDMDQVELKEFNPSEQNWRQ-HGEAYEEDDDGPRAGVQ |
D.MDQVEL..F.P....WR...GEAYE.D...PR.GV. | |
Retrocopy | DEMDQVELVDFDPNQEKWRH*NGEAYEDDEHHPRGGVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012576 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005972 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004320 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015982 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000008789 | 6 retrocopies | |
Mus musculus | ENSMUSG00000032285 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006752 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000007594 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009268 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000008600 | 1 retrocopy |