RetrogeneDB ID: | retro_etel_1010 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_200085:5009..5865(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA4 | ||
Ensembl ID: | ENSETEG00000004320 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 4 [Source:HGNC Symbol;Acc:14885] |
Percent Identity: | 62.37 % |
Parental protein coverage: | 81.02 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | KLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPNFSSPMDIFDMFFGGGGRMARERRGKNVVHQLSVT |
K.I.QA..V.SD.KK...YD.GGEQAIKEGG.....F.SPMDIFDMFFGGGGR..RER.GKNVVHQ.S.T | |
Retrocopy | KQIFQAFKVFSDAKKIELYDIGGEQAIKEGGQ-VVCFCSPMDIFDMFFGGGGRVPRERTGKNVVHQISLT |
Parental | LEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQG |
LED.YNG...KL.LQKNVIC.KCEG.GGKK..VE.CP.C.G...QI.I.QIGPG.VQQIQ..CIECKG.G | |
Retrocopy | LEDMYNGAIRKLTLQKNVICKKCEGRGGKKEAVECCPNC*GT*IQI*IHQIGPGIVQQIQSLCIECKGHG |
Parental | ERINPRDRCEGCSGAKVVREKKLIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRQ |
E.I.P.DR.E.C.G.K.V.EKK...VH..KGMKDGQKI.FH...DQEP.LE.GD.I..LDQKDHSVF... | |
Retrocopy | EPISPKDRHESCNGRKIVHEKKIL*VHINKGMKDGQKITFHIGIDQEPGLESGDMITILDQKDHSVFTK* |
Parental | GHDLIVKMKIQLSEALCGFKKTISTLDDRTLVIASKSGEVIKHGDLKCVRNEGMPIYKAPLEKGTLI-IQ |
G.DL...M..QL.EALC.F..T.STLD.R..VI.S..G....H...K.V..EG...Y..P.EKG.L.... | |
Retrocopy | GEDLFTSMDTQLVEALCVFQNTVSTLDNRSIVITSHPGQNVQHTYIKYVLHEGILVYCRPDEKGCLM>VE |
Parental | FLVLFPE |
F.V.FPE | |
Retrocopy | FKVNFPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012576 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005972 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004320 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016984 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000015982 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000008789 | 6 retrocopies | |
Mus musculus | ENSMUSG00000032285 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006752 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000007594 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009268 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000008600 | 1 retrocopy |