RetrogeneDB ID: | retro_etel_1031 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_202308:903..1481(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA4 | ||
Ensembl ID: | ENSETEG00000004320 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 4 [Source:HGNC Symbol;Acc:14885] |
Percent Identity: | 51.03 % |
Parental protein coverage: | 54.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKLIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRQGHDLIVKMKIQLSEALCGFK |
....EVH..KGMKDGQKI.FH..GDQEP.L.PGD.I....QKDH.VF.R.G.........QL.EAL.GF. | |
Retrocopy | RRILEVHIGKGMKDGQKITFHDGGDQEPGLDPGDIITFFHQKDHAVFTRGGEEVFMYIDTQLVEALFGFQ |
Parental | KTISTLDDRTLVIASKSGEVIKHGDLKCVRNEGMPIYKAPLEKGTLIIQFLVLFPEQQWLPPEKLPQL-E |
..IS....R..V..S..G...KH...KCV.N.GMPIY....EKG.LII.F.V.FPE...L.P.KL..L.. | |
Retrocopy | TPISIQPNRIIVSTSHPGRIVKHEKIKCVLNKGMPIYHPSYEKGLLIIVFKVNFPENGFLSPDKLFLL<G |
Parental | ALLPPRQKVKIADDMDQVELMEFSPN-EHNWRQHREAYEEDDDGPRAGVQCQTA |
.LLP.....K..D.MDQVEL....PN.E.......EAYE.DD...R.GVQCQT. | |
Retrocopy | KLLPEHKDIKETDEMDQVELADIDPNPERQHHYNGEAYEDDDPHSRGGVQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012576 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005972 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004320 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000016984 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000015982 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000008789 | 6 retrocopies | |
Mus musculus | ENSMUSG00000032285 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006752 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000007594 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009268 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000008600 | 1 retrocopy |