RetrogeneDB ID: | retro_ecab_1031 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | Un0001:228060..228308(+) | ||
Located in intron of: | ENSECAG00000021048 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015686 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.41 % |
Parental protein coverage: | 51.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRAELTQSEQQKEKRMKNTDNSLRELWDNIKHANIR |
....L.....E..N.LE.FNSR...AEER..EL....E.TQ.E.QKEKRM.....SLR.LWD.IKH.NI. | |
Retrocopy | QILKLTSNVTEMKNSLEEFNSRFEQAEERVGEL----EITQHEEQKEKRMNKDKQSLRDLWDTIKHINIL |
Parental | IIGVPE-GEERDKGAENL |
II.VPE..EER.KG.E.. | |
Retrocopy | IIEVPE<EEER*KGSEKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000015686 | 14 retrocopies |