>retro_ecab_207
ATGAAGAATCAGGCAAAGATGTTCCAAACAAAAGGAACAAGATAAATCTTCAGAAACCAACCCTAATGAAATGGAGTTAT
ATGATTTACCTGACAGAGAAATAAAAATAACCATCATGAAGATGCTTACCAAGGTTAGGAAAACAGTGTGTGAACAATGT
GAAAATGTCCACAAAGAGATAGAAAATATAAAAATGTACAAATAGAAATCATAAATCTGAAGAATACAATACGTGTACTA
AAAAAATCAACAGAGAGCTTCAACATCAGACTAGATGAAGCGGAATAAATGATCAGCGAACTGGAAGACAGGTCATTGGA
AATAATTCAGAGGAGTAAAAAGAAAAAAGAATGAAAAGGAGTGATGAAAGCTTAAAGGACTTAATGGGATACCACCAAGT
GGGCCAATATATGTGTCATGGGAGCCCCAGAGGAGAAGAGAAAGGACCAGAAAGTTTATTCAAAGAAATAACAACTGAAA
ACTTCCTAAATCTTGAGAGATGGACA
ORF - retro_ecab_207 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.57 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | MKKQGNMFQ-MKEQDKP-ENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNKETDSI-RKCQI |
| MK.Q..MFQ..KEQDK..E.N.NEME...LP..E......KMLTK......E...N..KE...I....QI |
Retrocopy | MKNQAKMFQ>QKEQDKSSETNPNEMELYDLPDREIKITIMKMLTKVRKTVCEQCENVHKEIENI<KNVQI |
|
Parental | EVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRAELTQSEQQK-EKRMKNTDNSLREL-WDNIKHAN |
| E...LKNTI..L....E.FN.RLDEAE..ISEL.DR.........K.EKRMK..D.SL..L.WD..K.AN |
Retrocopy | EIINLKNTIRVLKKSTESFNIRLDEAE*MISELEDRSLEIIQRSKK<EKRMKRSDESLKDL>WDTTKWAN |
|
Parental | IRIIGVPE-GEERDKGAENLFVEIIQENFPNLRKET |
| I...G.PE.GEE..KG.E.LF.EI..ENF.NL...T |
Retrocopy | ICVMGAPE<GEE--KGPESLFKEITTENFLNLERWT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .00 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_207 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_207 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_207 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
14 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000015686 | 14 retrocopies |
retro_ecab_1030, retro_ecab_1031, retro_ecab_1111, retro_ecab_1127, retro_ecab_207 , retro_ecab_208, retro_ecab_326, retro_ecab_487, retro_ecab_491, retro_ecab_518, retro_ecab_607, retro_ecab_625, retro_ecab_863, retro_ecab_881,
|