>retro_ecab_607
AAAATACATGAACAAAATGAGAATTTCAACAAAGAAACAGATTTTACAAGAAAAAAACAAGCAGAAATTACAGATATAAA
GTAGACAATAAATGAAAGGAAAAATACAATAGACAGCTTTAAGAGTAGGCTCAATCAGGCAGAAGAAAGAATCTGTGAGC
TCAAAGACAGATCACTTGATATTATCCAGTCAGAGGAGAATAAAGAAATTAGAATGAAAAAGAATGAAGAAAGGCTACAT
GAATTGTGAGATATGATCTAAAGAATCAATATCCCCACTATGGGAGTCCCAGAAGGAGCAGAGAGGGAGAAAGGGGCAGA
AATCTTATTTAAAGAATTAATGCCTGAC
ORF - retro_ecab_607 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
52.59 % |
Parental protein coverage: |
67.65 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RMDEHSGNFNKETDSIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRA-ELTQSEQQKEK |
| ...E...NFNKETD..RK.Q.E.T..K.TI.E..NT...F.SRL..AEERI.EL.DR.....QSE..KE. |
Retrocopy | KIHEQNENFNKETDFTRKKQAEITDIK*TINERKNTIDSFKSRLNQAEERICELKDRSLDIIQSEENKEI |
|
Parental | RMKNTDNSLRELWDNIKHANIRIIGVPEGEERDKGAENLFVEIIQE |
| RMK.....L.EL.D.I...NI...GVPEG.ER.KGAE.LF.E.... |
Retrocopy | RMKKNEERLHEL*DMI*RINIPTMGVPEGAEREKGAEILFKELMPD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .03 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_607 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_607 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_607 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
14 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000015686 | 14 retrocopies |
retro_ecab_1030, retro_ecab_1031, retro_ecab_1111, retro_ecab_1127, retro_ecab_207, retro_ecab_208, retro_ecab_326, retro_ecab_487, retro_ecab_491, retro_ecab_518, retro_ecab_607 , retro_ecab_625, retro_ecab_863, retro_ecab_881,
|