>retro_ecab_487
ATTAGAGTATAAAAAGACTTGGTGAGAGGAATGGATGAACACAGTGAGAACTTCAACAAAGAGACAGAAAGTATAAGAAA
GTAAGAATAGAAGTCACAGAGGTGAAGAATACAATAACTGAACTGAAGAGTACGTGGGAGGGGCTCAATAGCAGACTAGG
CGAAGCAGGAGAAAGGACCAGTGAAATCGAAGACAAGGCAGCGGAACTCACCCAATCAGAGCACCAAAAGGAAAAAAGAA
TGAAAAAAAGTGAAGCCAGCTTCAGGGACTTATGGGACAACATCAAACAGACTAACACTTGCATTATAGGAGTCCCAGAA
GGAGAAGAGAGAGAGAAAGGGGCAGAAAACTTATTTGAAGAAATAATGGCTGAAAACTTCCCTAATCTGGGGAAGGAA
ORF - retro_ecab_487 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.18 % |
Parental protein coverage: |
77.65 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | IKMLTKLKRRMDEHSGNFNKETDSIRK-CQIEVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRA-E |
| I.....L.R.MDEHS.NFNKET.SIRK...IEVTE.KNTI.EL..T.EG.NSRL.EA.ER.SE..D.A.E |
Retrocopy | IRV*KDLVRGMDEHSENFNKETESIRK<VRIEVTEVKNTITELKSTWEGLNSRLGEAGERTSEIEDKAAE |
|
Parental | LTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPEGEERDKGAENLFVEIIQENFPNLRKE |
| LTQSE............S.R.LWDNIK..N..IIGVPEGEER.KGAENLF.EI..ENFPNL.KE |
Retrocopy | LTQSEHXXXXXXXXXEASFRDLWDNIKQTNTCIIGVPEGEEREKGAENLFEEIMAENFPNLGKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .16 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .10 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_487 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_487 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_487 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
14 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000015686 | 14 retrocopies |
retro_ecab_1030, retro_ecab_1031, retro_ecab_1111, retro_ecab_1127, retro_ecab_207, retro_ecab_208, retro_ecab_326, retro_ecab_487 , retro_ecab_491, retro_ecab_518, retro_ecab_607, retro_ecab_625, retro_ecab_863, retro_ecab_881,
|