RetrogeneDB ID: | retro_ecab_710 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:13822579..13823045(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM192A | ||
Ensembl ID: | ENSECAG00000009324 | ||
Aliases: | None | ||
Description: | family with sequence similarity 192, member A [Source:HGNC Symbol;Acc:29856] |
Percent Identity: | 70.44 % |
Parental protein coverage: | 61.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RQQELIEKQRREEELKELKEYRISFNHVGISSENKKEVEKKVAVKPMETRNKFSQAKLLAGAVKHKSSES |
R.Q.L.EKQ.REE.LKE.KEY....N.VGIS.ENKKEVEK..AVKP..T.NKFSQA.LL.GA.KH.SSES | |
Retrocopy | RNQKLTEKQQREE-LKEMKEYKSNLNEVGISPENKKEVEK*LAVKPRGTKNKFSQAQLLPGALKHESSES |
Parental | GNSVKRLKSDPDPDDKNQEALPCVSLGSASLSAPSIHCPSAAVCIGILPGLGAYSG-SSDSESSSDS-EG |
G.SVKRLK.DPD.DD.NQEAL.CVSLGS.SLS.PSI.CPS.AVC.GILPGLG..SG..SDSESSS.S... | |
Retrocopy | GHSVKRLKLDPDSDDNNQEALSCVSLGSTSLSGPSIYCPSTAVCNGILPGLGI*SG<DSDSESSSYS<QS |
Parental | TINATGKIVSSIFRTNTFL |
T..A...IVSSI..TN.FL | |
Retrocopy | TLSAMA*IVSSISQTNIFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 14 .58 RPM |
SRP021940_cerebellum | 0 .00 RPM | 40 .25 RPM |
SRP021940_embryo | 0 .00 RPM | 29 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 18 .38 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 19 .44 RPM |
SRP021940_testis | 0 .00 RPM | 81 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002242 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000001392 | 1 retrocopy | |
Equus caballus | ENSECAG00000009324 | 1 retrocopy |
retro_ecab_710 ,
|
Echinops telfairi | ENSETEG00000014379 | 1 retrocopy | |
Homo sapiens | ENSG00000172775 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003938 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013492 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031774 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002716 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006909 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007382 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008148 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013300 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012791 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005973 | 1 retrocopy |