RetrogeneDB ID: | retro_tsyr_884 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_229638:404..818(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM192A | ||
Ensembl ID: | ENSTSYG00000013300 | ||
Aliases: | None | ||
Description: | family with sequence similarity 192, member A [Source:HGNC Symbol;Acc:29856] |
Percent Identity: | 93.48 % |
Parental protein coverage: | 54.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NNLKKVGMSSENKKEVEKKPPVKPIESKTKFSQAKLLAGAVKHKSSESGNSVKRLKPDPDPDDKNQEASS |
NNLKKVGMSSENKKEVEKKPP.KPIESKTKFSQAKLLAGAVK.KSSESGNSVK.LKPDPDPDDKNQEASS | |
Retrocopy | NNLKKVGMSSENKKEVEKKPPAKPIESKTKFSQAKLLAGAVKQKSSESGNSVKSLKPDPDPDDKNQEASS |
Parental | CKSPGNTPLSGPSLHCPSAAVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP |
CKSPGNTPLSGPSLHCPSAAVC.G.L.GLGA.SGSSDSESSSD.EGTINA.GKIVSSIFRTNTFLEAP | |
Retrocopy | CKSPGNTPLSGPSLHCPSAAVCVGLLAGLGAHSGSSDSESSSDREGTINAPGKIVSSIFRTNTFLEAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002242 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000001392 | 1 retrocopy | |
Equus caballus | ENSECAG00000009324 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014379 | 1 retrocopy | |
Homo sapiens | ENSG00000172775 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003938 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013492 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031774 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002716 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006909 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007382 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008148 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013300 | 1 retrocopy |
retro_tsyr_884 ,
|
Tursiops truncatus | ENSTTRG00000012791 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005973 | 1 retrocopy |